Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z _ __init__() (pyhealth.calib.calibration.DirichletCalibration method) (pyhealth.calib.calibration.HistogramBinning method) (pyhealth.calib.calibration.KCal method) (pyhealth.calib.calibration.TemperatureScaling method) (pyhealth.calib.predictionset.ClusterLabel method) (pyhealth.calib.predictionset.CovariateLabel method) (pyhealth.calib.predictionset.FavMac method) (pyhealth.calib.predictionset.LABEL method) (pyhealth.calib.predictionset.NeighborhoodLabel method) (pyhealth.calib.predictionset.SCRIB method) A absolute() (pyhealth.graph.knowledge_graph.Path method) AdaCare (class in pyhealth.models) AdaCareLayer (class in pyhealth.models) adapter_model_id (pyhealth.models.SdohClassifier attribute) add() (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.StageNetProcessor method) add_module() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) add_token() (pyhealth.tokenizer.Vocabulary method) Agent (class in pyhealth.models) AgentLayer (class in pyhealth.models) anchor (pyhealth.graph.knowledge_graph.Path property) Any (class in pyhealth.datasets.utils) (class in pyhealth.models.jamba_ehr) (class in pyhealth.processors.graph_processor) api_key (pyhealth.models.SdohClassifier attribute) append() (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.TransitionLayer method) apply() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.califorest.RandomForestClassifier method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) apply_self_attention_rules() (in module pyhealth.interpret.methods.chefer) as_posix() (pyhealth.graph.knowledge_graph.Path method) as_uri() (pyhealth.graph.knowledge_graph.Path method) assign_bin() (in module pyhealth.metrics.calibration) astimezone() (pyhealth.datasets.utils.datetime method) ATC (class in pyhealth.medcode) attr_dict (pyhealth.data.Event attribute), [1] attribute() (pyhealth.interpret.methods.basic_gradient.BasicGradientSaliencyMaps method) (pyhealth.interpret.methods.CheferRelevance method) (pyhealth.interpret.methods.deeplift.DeepLift method) (pyhealth.interpret.methods.GIM method) (pyhealth.interpret.methods.IntegratedGradients method) AUDIO (pyhealth.processors.ModalityType attribute) AudioProcessor (class in pyhealth.processors) available_attributes (pyhealth.medcode.ATC property) (pyhealth.medcode.CCSCM property) (pyhealth.medcode.CCSPROC property) (pyhealth.medcode.ICD10CM property) (pyhealth.medcode.ICD10PROC property) (pyhealth.medcode.ICD9CM property) (pyhealth.medcode.ICD9PROC property) (pyhealth.medcode.InnerMap property) (pyhealth.medcode.NDC property) (pyhealth.medcode.RxNorm property) avg_heads() (in module pyhealth.interpret.methods.chefer) B base_model_id (pyhealth.models.SdohClassifier attribute) BaseDataset (class in pyhealth.datasets) BaseModel (class in pyhealth.models) (class in pyhealth.models.califorest) (class in pyhealth.models.jamba_ehr) BaseTask (class in pyhealth.tasks.base_task) BasicGradientSaliencyMaps (class in pyhealth.interpret.methods.basic_gradient) batch_decode_2d() (pyhealth.tokenizer.Tokenizer method) batch_decode_3d() (pyhealth.tokenizer.Tokenizer method) batch_encode_2d() (pyhealth.tokenizer.Tokenizer method) batch_encode_3d() (pyhealth.tokenizer.Tokenizer method) batch_size (pyhealth.datasets.utils.DataLoader attribute) BenchmarkEHRShot (class in pyhealth.tasks.benchmark_ehrshot) bfloat16() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) binary_metrics_fn() (in module pyhealth.metrics.binary) BinaryLabelProcessor (class in pyhealth.processors) BIOT (class in pyhealth.models) BMDHSDataset (class in pyhealth.datasets) BMDHSDiseaseClassification (class in pyhealth.tasks.bmd_hs_disease_classification) brier_top1() (in module pyhealth.metrics.calibration) buffers() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) build_layer_schedule() (in module pyhealth.models.jamba_ehr) BuildEvents() (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV static method) C calc_loss() (pyhealth.models.MoleRecLayer method) calc_membership_inference() (in module pyhealth.metrics.generative) calc_nnaar() (in module pyhealth.metrics.generative) calculate_loss() (pyhealth.models.SafeDrugLayer method) calibrate() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] CaliForest (class in pyhealth.models.califorest) call_super_init (pyhealth.calib.calibration.DirichletCalibration attribute), [1] (pyhealth.calib.calibration.HistogramBinning attribute), [1] (pyhealth.calib.calibration.KCal attribute), [1] (pyhealth.calib.calibration.TemperatureScaling attribute), [1] (pyhealth.calib.predictionset.ClusterLabel attribute), [1] (pyhealth.calib.predictionset.CovariateLabel attribute), [1] (pyhealth.calib.predictionset.FavMac attribute), [1] (pyhealth.calib.predictionset.LABEL attribute), [1] (pyhealth.calib.predictionset.NeighborhoodLabel attribute), [1] (pyhealth.calib.predictionset.SCRIB attribute), [1] (pyhealth.models.AdaCare attribute) (pyhealth.models.AdaCareLayer attribute) (pyhealth.models.Agent attribute) (pyhealth.models.AgentLayer attribute) (pyhealth.models.BaseModel attribute) (pyhealth.models.BIOT attribute) (pyhealth.models.califorest.BaseModel attribute) (pyhealth.models.califorest.CaliForest attribute) (pyhealth.models.CNN attribute) (pyhealth.models.CNNLayer attribute) (pyhealth.models.ConCare attribute) (pyhealth.models.ConCareLayer attribute) (pyhealth.models.ContraWR attribute) (pyhealth.models.CorGAN attribute) (pyhealth.models.Deepr attribute) (pyhealth.models.DeeprLayer attribute) (pyhealth.models.DenseBlock attribute) (pyhealth.models.DenseLayer attribute) (pyhealth.models.EHRMamba attribute) (pyhealth.models.EHRMambaCEHR attribute) (pyhealth.models.GAMENet attribute) (pyhealth.models.GAMENetLayer attribute) (pyhealth.models.GAN attribute) (pyhealth.models.GAT attribute) (pyhealth.models.GCN attribute) (pyhealth.models.GPT2 attribute) (pyhealth.models.GraphCare attribute) (pyhealth.models.GRASP attribute) (pyhealth.models.GRASPLayer attribute) (pyhealth.models.HALO attribute) (pyhealth.models.jamba_ehr.BaseModel attribute) (pyhealth.models.jamba_ehr.EmbeddingModel attribute) (pyhealth.models.jamba_ehr.JambaEHR attribute) (pyhealth.models.jamba_ehr.JambaLayer attribute) (pyhealth.models.jamba_ehr.MambaBlock attribute) (pyhealth.models.jamba_ehr.TransformerBlock attribute) (pyhealth.models.LogisticRegression attribute) (pyhealth.models.MambaBlock attribute) (pyhealth.models.MedFuse attribute) (pyhealth.models.MedFuseLayer attribute) (pyhealth.models.MedGAN attribute) (pyhealth.models.MedLink attribute) (pyhealth.models.MICRON attribute) (pyhealth.models.MICRONLayer attribute) (pyhealth.models.MLP attribute) (pyhealth.models.MoleRec attribute) (pyhealth.models.MoleRecLayer attribute) (pyhealth.models.MultimodalAdaCare attribute) (pyhealth.models.MultimodalRETAIN attribute) (pyhealth.models.MultimodalRNN attribute) (pyhealth.models.PromptEHR attribute) (pyhealth.models.ResBlock2D attribute) (pyhealth.models.RETAIN attribute) (pyhealth.models.RETAINLayer attribute) (pyhealth.models.RNN attribute) (pyhealth.models.RNNLayer attribute) (pyhealth.models.SafeDrug attribute) (pyhealth.models.SafeDrugLayer attribute) (pyhealth.models.SdohClassifier attribute) (pyhealth.models.SinusoidalTimeEmbedding attribute) (pyhealth.models.SparcNet attribute) (pyhealth.models.StageAttentionNet attribute) (pyhealth.models.StageNet attribute) (pyhealth.models.StageNetAttentionLayer attribute) (pyhealth.models.StageNetLayer attribute) (pyhealth.models.TCN attribute) (pyhealth.models.TCNLayer attribute) (pyhealth.models.TextEmbedding attribute) (pyhealth.models.TFM_TOKEN_Classifier attribute) (pyhealth.models.TFM_VQVAE2_deep attribute) (pyhealth.models.TFMTokenizer attribute) (pyhealth.models.Transformer attribute) (pyhealth.models.TransformerDeID attribute) (pyhealth.models.TransformerLayer attribute) (pyhealth.models.TransformersModel attribute) (pyhealth.models.TransitionLayer attribute) (pyhealth.models.UnifiedMultimodalEmbeddingModel attribute) (pyhealth.models.VAE attribute) (pyhealth.models.VisionEmbeddingModel attribute) CancerMutationBurden (class in pyhealth.tasks) CancerSurvivalPrediction (class in pyhealth.tasks) capitalize() (pyhealth.processors.ModalityType method) cardiology_isAD_fn() (in module pyhealth.tasks.cardiology_detect) cardiology_isAR_fn() (in module pyhealth.tasks.cardiology_detect) cardiology_isBBBFB_fn() (in module pyhealth.tasks.cardiology_detect) cardiology_isCD_fn() (in module pyhealth.tasks.cardiology_detect) cardiology_isWA_fn() (in module pyhealth.tasks.cardiology_detect) CardiologyDataset (class in pyhealth.datasets) casefold() (pyhealth.processors.ModalityType method) cast() (in module pyhealth.models.jamba_ehr) CCSCM (class in pyhealth.medcode) CCSPROC (class in pyhealth.medcode) center() (pyhealth.processors.ModalityType method) chain (class in pyhealth.datasets.splitter) check_worker_number_rationality() (pyhealth.datasets.utils.DataLoader method) CheferRelevance (class in pyhealth.interpret.methods) ChestXray14BinaryClassification (class in pyhealth.tasks) ChestXray14Dataset (class in pyhealth.datasets) ChestXray14MultilabelClassification (class in pyhealth.tasks) children() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) chmod() (pyhealth.graph.knowledge_graph.Path method) classes (pyhealth.datasets.ChestXray14Dataset attribute), [1] classes_ (pyhealth.models.califorest.LogisticRegression attribute) (pyhealth.models.califorest.RandomForestClassifier attribute) clean_tmpdir() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) CLINICAL_SIGNIFICANCE_CATEGORIES (pyhealth.tasks.VariantClassificationClinVar attribute), [1] ClinVarDataset (class in pyhealth.datasets) close() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) ClusterLabel (class in pyhealth.calib.predictionset), [1] CNN (class in pyhealth.models) CNNLayer (class in pyhealth.models) CODE (pyhealth.processors.ModalityType attribute) code_attr (pyhealth.tasks.generate_ehr.EHRGeneration attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 attribute) coef_ (pyhealth.models.califorest.LogisticRegression attribute) collate_fn_dict() (in module pyhealth.datasets.utils) collate_fn_dict_with_padding() (in module pyhealth.datasets.utils) combine() (pyhealth.datasets.utils.datetime method) compile() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) ComprehensivenessMetric (class in pyhealth.metrics.interpretability.comprehensiveness) compute() (pyhealth.metrics.interpretability.base.RemovalBasedMetric method) (pyhealth.metrics.interpretability.comprehensiveness.ComprehensivenessMetric method) (pyhealth.metrics.interpretability.sufficiency.SufficiencyMetric method) compute_alpha() (pyhealth.models.RETAINLayer method) compute_beta() (pyhealth.models.RETAINLayer method) compute_discriminator_privacy() (in module pyhealth.metrics.generative) compute_mle() (in module pyhealth.metrics.generative) compute_prevalence_metrics() (in module pyhealth.metrics.generative) compute_reconstruction_loss() (pyhealth.models.MICRONLayer static method) compute_scores() (pyhealth.models.MedLink method) ConCare (class in pyhealth.models) concare_encoder() (pyhealth.models.ConCareLayer method) ConCareLayer (class in pyhealth.models) config (pyhealth.datasets.BaseDataset attribute) config_path (pyhealth.datasets.BMDHSDataset attribute) (pyhealth.datasets.ChestXray14Dataset attribute) (pyhealth.datasets.ClinVarDataset attribute) (pyhealth.datasets.COSMICDataset attribute) (pyhealth.datasets.COVID19CXRDataset attribute) (pyhealth.datasets.DREAMTDataset attribute) (pyhealth.datasets.EHRShotDataset attribute) (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MedicalTranscriptionsDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.Support2Dataset attribute) (pyhealth.datasets.TCGAPRADDataset attribute) ContraWR (class in pyhealth.models) convert() (pyhealth.medcode.ATC static method) (pyhealth.medcode.CCSCM static method) (pyhealth.medcode.CCSPROC static method) (pyhealth.medcode.ICD10CM static method) (pyhealth.medcode.ICD10PROC static method) (pyhealth.medcode.ICD9CM static method) (pyhealth.medcode.ICD9PROC static method) (pyhealth.medcode.InnerMap static method) (pyhealth.medcode.NDC static method) (pyhealth.medcode.RxNorm static method) convert_indices_to_tokens() (pyhealth.tokenizer.Tokenizer method) convert_signals() (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV static method) convert_to_bipolar() (pyhealth.tasks.temple_university_EEG_tasks.EEGAbnormalTUAB static method) convert_tokens_to_indices() (pyhealth.tokenizer.Tokenizer method) CorGAN (class in pyhealth.models) COSMICDataset (class in pyhealth.datasets) count() (pyhealth.processors.ModalityType method) CovariateLabel (class in pyhealth.calib.predictionset), [1] COVID19CXRClassification (class in pyhealth.tasks.covid19_cxr_classification), [1] COVID19CXRDataset (class in pyhealth.datasets) cpu() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) create_directory() (in module pyhealth.datasets.utils) create_tmpdir() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) CrossMap (class in pyhealth.medcode) ctime() (pyhealth.datasets.utils.datetime method) cuda() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) cumax() (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) cwd() (pyhealth.graph.knowledge_graph.Path class method) D data_source (pyhealth.data.Patient attribute) DataLoader (class in pyhealth.datasets.utils) dataset (pyhealth.datasets.utils.DataLoader attribute) dataset_name (pyhealth.datasets.BaseDataset attribute) (pyhealth.datasets.BMDHSDataset attribute) (pyhealth.datasets.ChestXray14Dataset attribute) (pyhealth.datasets.ClinVarDataset attribute) (pyhealth.datasets.COSMICDataset attribute) (pyhealth.datasets.COVID19CXRDataset attribute) (pyhealth.datasets.DREAMTDataset attribute) (pyhealth.datasets.EHRShotDataset attribute) (pyhealth.datasets.eICUDataset attribute) DATASET_NAME (pyhealth.datasets.FHIRDataset attribute) dataset_name (pyhealth.datasets.MedicalTranscriptionsDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) DATASET_NAME (pyhealth.datasets.MIMIC4FHIR attribute) dataset_name (pyhealth.datasets.PhysioNetDeIDDataset attribute) (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.datasets.Support2Dataset attribute) (pyhealth.datasets.TCGAPRADDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) date() (pyhealth.datasets.utils.datetime method) datetime (class in pyhealth.datasets.utils) dateutil_parse() (in module pyhealth.datasets.utils) day (pyhealth.datasets.utils.datetime attribute) decision_function() (pyhealth.models.califorest.LogisticRegression method) decision_path() (pyhealth.models.califorest.RandomForestClassifier method) decode_dataset() (in module pyhealth.tasks.generate_ehr) decoder() (pyhealth.models.VAE method) DeepLift (class in pyhealth.interpret.methods.deeplift) Deepr (class in pyhealth.models) DeeprLayer (class in pyhealth.models) DEFAULT_CONFIG_PATH (pyhealth.datasets.FHIRDataset attribute) (pyhealth.datasets.MIMIC4FHIR attribute) DEFAULT_OUTPUT_FORMAT (pyhealth.datasets.FHIRDataset attribute) (pyhealth.datasets.MIMIC4FHIR attribute) default_task (pyhealth.datasets.BaseDataset property) (pyhealth.datasets.BMDHSDataset property) (pyhealth.datasets.ChestXray14Dataset property) (pyhealth.datasets.ClinVarDataset property) (pyhealth.datasets.COSMICDataset property) (pyhealth.datasets.COVID19CXRDataset property) (pyhealth.datasets.DREAMTDataset property) (pyhealth.datasets.EHRShotDataset property) (pyhealth.datasets.eICUDataset property) (pyhealth.datasets.FHIRDataset property) (pyhealth.datasets.MedicalTranscriptionsDataset property) (pyhealth.datasets.MIMIC3Dataset property) (pyhealth.datasets.MIMIC4Dataset property) (pyhealth.datasets.MIMIC4FHIR property) (pyhealth.datasets.OMOPDataset property) (pyhealth.datasets.PhysioNetDeIDDataset property) (pyhealth.datasets.SleepEDFDataset property) (pyhealth.datasets.Support2Dataset property) (pyhealth.datasets.TCGAPRADDataset property) (pyhealth.datasets.TUABDataset property) (pyhealth.datasets.TUEVDataset property) deidentify() (pyhealth.models.TransformerDeID method) DeIDNERTask (class in pyhealth.tasks) DenseBlock (class in pyhealth.models) DenseLayer (class in pyhealth.models) densify() (pyhealth.models.califorest.LogisticRegression method) determine_encoder_params() (pyhealth.models.ContraWR method) dev (pyhealth.datasets.BaseDataset attribute) device (pyhealth.models.AdaCare property) (pyhealth.models.Agent property) (pyhealth.models.BaseModel property) (pyhealth.models.BIOT property) (pyhealth.models.califorest.BaseModel property) (pyhealth.models.califorest.CaliForest property) (pyhealth.models.CNN property) (pyhealth.models.ConCare property) (pyhealth.models.ContraWR property) (pyhealth.models.CorGAN property) (pyhealth.models.Deepr property) (pyhealth.models.EHRMamba property) (pyhealth.models.EHRMambaCEHR property) (pyhealth.models.GAMENet property) (pyhealth.models.GAT property) (pyhealth.models.GCN property) (pyhealth.models.GPT2 property) (pyhealth.models.GraphCare property) (pyhealth.models.GRASP property) (pyhealth.models.HALO property) (pyhealth.models.jamba_ehr.BaseModel property) (pyhealth.models.jamba_ehr.EmbeddingModel property) (pyhealth.models.jamba_ehr.JambaEHR property) (pyhealth.models.LogisticRegression property) (pyhealth.models.MedFuse property) (pyhealth.models.MedGAN property) (pyhealth.models.MedLink property) (pyhealth.models.MICRON property) (pyhealth.models.MLP property) (pyhealth.models.MoleRec property) (pyhealth.models.MultimodalAdaCare property) (pyhealth.models.MultimodalRETAIN property) (pyhealth.models.MultimodalRNN property) (pyhealth.models.PromptEHR property) (pyhealth.models.RETAIN property) (pyhealth.models.RNN property) (pyhealth.models.SafeDrug property) (pyhealth.models.SdohClassifier property) (pyhealth.models.SparcNet property) (pyhealth.models.StageAttentionNet property) (pyhealth.models.StageNet property) (pyhealth.models.TCN property) (pyhealth.models.TFMTokenizer property) (pyhealth.models.Transformer property) (pyhealth.models.TransformerDeID property) (pyhealth.models.TransformersModel property) (pyhealth.models.VAE property) (pyhealth.models.VisionEmbeddingModel property) dim() (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) DirichletCalibration (class in pyhealth.calib.calibration), [1] discriminate() (pyhealth.models.GAN method) disease (pyhealth.tasks.ChestXray14BinaryClassification attribute) disparate_impact() (in module pyhealth.metrics.fairness_utils) DKA_ICD10_PREFIXES (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) DKA_ICD9_CODES (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) DKAPredictionMIMIC4 (class in pyhealth.tasks.dka) double() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) DREAMTDataset (class in pyhealth.datasets) drive (pyhealth.graph.knowledge_graph.Path property) drop_last (pyhealth.datasets.utils.DataLoader attribute) drug_recommendation_mimic3_fn() (in module pyhealth.tasks.drug_recommendation) drug_recommendation_mimic4_fn() (in module pyhealth.tasks.drug_recommendation) drug_recommendation_omop_fn() (in module pyhealth.tasks.drug_recommendation) DrugRecommendationEICU (class in pyhealth.tasks.drug_recommendation) DrugRecommendationMIMIC3 (class in pyhealth.tasks.drug_recommendation) DrugRecommendationMIMIC4 (class in pyhealth.tasks.drug_recommendation) dst() (pyhealth.datasets.utils.datetime method) dump_patches (pyhealth.calib.calibration.DirichletCalibration attribute), [1] (pyhealth.calib.calibration.HistogramBinning attribute), [1] (pyhealth.calib.calibration.KCal attribute), [1] (pyhealth.calib.calibration.TemperatureScaling attribute), [1] (pyhealth.calib.predictionset.ClusterLabel attribute), [1] (pyhealth.calib.predictionset.CovariateLabel attribute), [1] (pyhealth.calib.predictionset.FavMac attribute), [1] (pyhealth.calib.predictionset.LABEL attribute), [1] (pyhealth.calib.predictionset.NeighborhoodLabel attribute), [1] (pyhealth.calib.predictionset.SCRIB attribute), [1] (pyhealth.models.AdaCare attribute) (pyhealth.models.AdaCareLayer attribute) (pyhealth.models.Agent attribute) (pyhealth.models.AgentLayer attribute) (pyhealth.models.BaseModel attribute) (pyhealth.models.BIOT attribute) (pyhealth.models.califorest.BaseModel attribute) (pyhealth.models.califorest.CaliForest attribute) (pyhealth.models.CNN attribute) (pyhealth.models.CNNLayer attribute) (pyhealth.models.ConCare attribute) (pyhealth.models.ConCareLayer attribute) (pyhealth.models.ContraWR attribute) (pyhealth.models.CorGAN attribute) (pyhealth.models.Deepr attribute) (pyhealth.models.DeeprLayer attribute) (pyhealth.models.DenseBlock attribute) (pyhealth.models.DenseLayer attribute) (pyhealth.models.EHRMamba attribute) (pyhealth.models.EHRMambaCEHR attribute) (pyhealth.models.GAMENet attribute) (pyhealth.models.GAMENetLayer attribute) (pyhealth.models.GAN attribute) (pyhealth.models.GAT attribute) (pyhealth.models.GCN attribute) (pyhealth.models.GPT2 attribute) (pyhealth.models.GraphCare attribute) (pyhealth.models.GRASP attribute) (pyhealth.models.GRASPLayer attribute) (pyhealth.models.HALO attribute) (pyhealth.models.jamba_ehr.BaseModel attribute) (pyhealth.models.jamba_ehr.EmbeddingModel attribute) (pyhealth.models.jamba_ehr.JambaEHR attribute) (pyhealth.models.jamba_ehr.JambaLayer attribute) (pyhealth.models.jamba_ehr.MambaBlock attribute) (pyhealth.models.jamba_ehr.TransformerBlock attribute) (pyhealth.models.LogisticRegression attribute) (pyhealth.models.MambaBlock attribute) (pyhealth.models.MedFuse attribute) (pyhealth.models.MedFuseLayer attribute) (pyhealth.models.MedGAN attribute) (pyhealth.models.MedLink attribute) (pyhealth.models.MICRON attribute) (pyhealth.models.MICRONLayer attribute) (pyhealth.models.MLP attribute) (pyhealth.models.MoleRec attribute) (pyhealth.models.MoleRecLayer attribute) (pyhealth.models.MultimodalAdaCare attribute) (pyhealth.models.MultimodalRETAIN attribute) (pyhealth.models.MultimodalRNN attribute) (pyhealth.models.PromptEHR attribute) (pyhealth.models.ResBlock2D attribute) (pyhealth.models.RETAIN attribute) (pyhealth.models.RETAINLayer attribute) (pyhealth.models.RNN attribute) (pyhealth.models.RNNLayer attribute) (pyhealth.models.SafeDrug attribute) (pyhealth.models.SafeDrugLayer attribute) (pyhealth.models.SdohClassifier attribute) (pyhealth.models.SinusoidalTimeEmbedding attribute) (pyhealth.models.SparcNet attribute) (pyhealth.models.StageAttentionNet attribute) (pyhealth.models.StageNet attribute) (pyhealth.models.StageNetAttentionLayer attribute) (pyhealth.models.StageNetLayer attribute) (pyhealth.models.TCN attribute) (pyhealth.models.TCNLayer attribute) (pyhealth.models.TextEmbedding attribute) (pyhealth.models.TFM_TOKEN_Classifier attribute) (pyhealth.models.TFM_VQVAE2_deep attribute) (pyhealth.models.TFMTokenizer attribute) (pyhealth.models.Transformer attribute) (pyhealth.models.TransformerDeID attribute) (pyhealth.models.TransformerLayer attribute) (pyhealth.models.TransformersModel attribute) (pyhealth.models.TransitionLayer attribute) (pyhealth.models.UnifiedMultimodalEmbeddingModel attribute) (pyhealth.models.VAE attribute) (pyhealth.models.VisionEmbeddingModel attribute) E ece_classwise() (in module pyhealth.metrics.calibration) ece_confidence_binary() (in module pyhealth.metrics.calibration) ece_confidence_multiclass() (in module pyhealth.metrics.calibration) edge_index (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) edge_type (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) EEGAbnormalTUAB (class in pyhealth.tasks.temple_university_EEG_tasks) EEGEventsTUEV (class in pyhealth.tasks.temple_university_EEG_tasks) EHRGeneration (class in pyhealth.tasks.generate_ehr) EHRGenerationMIMIC3 (class in pyhealth.tasks.generate_ehr) EHRGenerationMIMIC4 (class in pyhealth.tasks.generate_ehr) EHRMamba (class in pyhealth.models) EHRMambaCEHR (class in pyhealth.models) EHRShotDataset (class in pyhealth.datasets) eICUDataset (class in pyhealth.datasets) embedding_model (pyhealth.models.MICRON attribute) EmbeddingModel (class in pyhealth.models.jamba_ehr) encode() (pyhealth.processors.ModalityType method) encode_corpus() (pyhealth.models.MedLink method) encode_queries() (pyhealth.models.MedLink method) encoder() (pyhealth.models.VAE method) endswith() (pyhealth.processors.ModalityType method) entity2id (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) error_overall_ps() (in module pyhealth.metrics.prediction_set) error_ps() (in module pyhealth.metrics.prediction_set) estimator_ (pyhealth.models.califorest.RandomForestClassifier attribute) estimators_ (pyhealth.models.califorest.RandomForestClassifier attribute) estimators_samples_ (pyhealth.models.califorest.RandomForestClassifier attribute) (pyhealth.models.califorest.RandomForestClassifier property) eval() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) evaluate() (pyhealth.metrics.interpretability.evaluator.Evaluator method) (pyhealth.models.MedLink method) (pyhealth.trainer.Trainer method) evaluate_attribution() (in module pyhealth.metrics.interpretability.evaluator) (pyhealth.metrics.interpretability.evaluator.Evaluator method) evaluate_synthetic_ehr() (in module pyhealth.metrics.generative) Evaluator (class in pyhealth.metrics.interpretability.evaluator) Event (class in pyhealth.data) event_type (pyhealth.data.Event attribute), [1] (pyhealth.tasks.generate_ehr.EHRGeneration attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 attribute) event_type_partitions (pyhealth.data.Patient attribute) exclude_minors (pyhealth.tasks.readmission_prediction.ReadmissionPredictionEICU attribute) exists() (pyhealth.graph.knowledge_graph.Path method) expandtabs() (pyhealth.processors.ModalityType method) expanduser() (pyhealth.graph.knowledge_graph.Path method) extend() (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.TransitionLayer method) extra_repr() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) F f_ (pyhealth.models.califorest.IsotonicRegression attribute) fairness_metrics_fn() (in module pyhealth.metrics.fairness) FavMac (class in pyhealth.calib.predictionset), [1] feature_importances_ (pyhealth.models.califorest.RandomForestClassifier attribute) (pyhealth.models.califorest.RandomForestClassifier property) feature_names_in_ (pyhealth.models.califorest.LogisticRegression attribute) (pyhealth.models.califorest.RandomForestClassifier attribute) feature_processors (pyhealth.models.MICRON attribute) FeatureProcessor (class in pyhealth.processors) (class in pyhealth.processors.graph_processor) FHIRDataset (class in pyhealth.datasets) find() (pyhealth.processors.ModalityType method) fit() (pyhealth.calib.calibration.KCal method), [1] (pyhealth.models.califorest.CaliForest method) (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) fit_kde() (in module pyhealth.calib.predictionset.covariate) fit_model() (pyhealth.models.califorest.CaliForest method) fit_transform() (pyhealth.models.califorest.IsotonicRegression method) flatten_list() (in module pyhealth.datasets.utils) float() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) fold (pyhealth.datasets.utils.datetime attribute) format() (pyhealth.processors.ModalityType method) format_map() (pyhealth.processors.ModalityType method) forward() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) forward_ana() (pyhealth.models.TFM_VQVAE2_deep method) forward_forecasting() (pyhealth.models.EHRMambaCEHR method) forward_from_embedding() (pyhealth.models.MLP method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.Transformer method) from_dict() (pyhealth.data.Event class method) from_iterable() (pyhealth.datasets.splitter.chain method) fromisocalendar() (pyhealth.datasets.utils.datetime method) fromisoformat() (pyhealth.datasets.utils.datetime method) fromordinal() (pyhealth.datasets.utils.datetime method) fromtimestamp() (pyhealth.datasets.utils.datetime method) G GAMENet (class in pyhealth.models) GAMENetLayer (class in pyhealth.models) GAN (class in pyhealth.models) GAT (class in pyhealth.models) GCN (class in pyhealth.models) generate() (pyhealth.models.CorGAN method) (pyhealth.models.GPT2 method) (pyhealth.models.HALO method) (pyhealth.models.MedGAN method) (pyhealth.models.PromptEHR method) generate_average_projection() (pyhealth.models.MoleRec method) generate_ddi_adj() (pyhealth.models.GAMENet method) (pyhealth.models.MICRON method) (pyhealth.models.MoleRec method) (pyhealth.models.SafeDrug method) generate_ehr_adj() (pyhealth.models.GAMENet method) generate_fake() (pyhealth.models.GAN method) generate_mask_H() (pyhealth.models.SafeDrug method) generate_molecule_info() (pyhealth.models.SafeDrug method) generate_smiles_list() (pyhealth.models.MoleRec method) (pyhealth.models.SafeDrug method) generate_substructure_mask() (pyhealth.models.MoleRec method) get_ancestors() (pyhealth.medcode.ATC method) (pyhealth.medcode.CCSCM method) (pyhealth.medcode.CCSPROC method) (pyhealth.medcode.ICD10CM method) (pyhealth.medcode.ICD10PROC method) (pyhealth.medcode.ICD9CM method) (pyhealth.medcode.ICD9PROC method) (pyhealth.medcode.InnerMap method) (pyhealth.medcode.NDC method) (pyhealth.medcode.RxNorm method) get_attention_layers() (pyhealth.models.StageAttentionNet method) (pyhealth.models.Transformer method) get_attn_grad() (pyhealth.models.StageNetAttentionLayer method) get_attn_map() (pyhealth.models.StageNetAttentionLayer method) get_buffer() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) get_dataloader() (in module pyhealth.datasets.utils) get_ddi() (pyhealth.medcode.ATC method) get_descendants() (pyhealth.medcode.ATC method) (pyhealth.medcode.CCSCM method) (pyhealth.medcode.CCSPROC method) (pyhealth.medcode.ICD10CM method) (pyhealth.medcode.ICD10PROC method) (pyhealth.medcode.ICD9CM method) (pyhealth.medcode.ICD9PROC method) (pyhealth.medcode.InnerMap method) (pyhealth.medcode.NDC method) (pyhealth.medcode.RxNorm method) get_embedding_model() (pyhealth.models.MLP method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.Transformer method) get_embeddings() (pyhealth.models.BIOT method) (pyhealth.models.TFMTokenizer method) get_events() (pyhealth.data.Patient method) get_extra_state() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) get_feature_names_out() (pyhealth.models.califorest.IsotonicRegression method) get_gradient_saliency_maps() (pyhealth.interpret.methods.basic_gradient.BasicGradientSaliencyMaps method) get_last_visit() (in module pyhealth.models.jamba_ehr) get_len() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) get_loss() (pyhealth.models.MedLink method) get_loss_function() (pyhealth.models.AdaCare method) (pyhealth.models.Agent method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.ConCare method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MedFuse method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.RETAIN method) (pyhealth.models.RNN method) (pyhealth.models.SafeDrug method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.TCN method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformersModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) get_metadata_routing() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) get_model_predictions() (in module pyhealth.metrics.interpretability.utils) get_output_info() (pyhealth.models.VisionEmbeddingModel method) get_output_size() (pyhealth.models.AdaCare method) (pyhealth.models.Agent method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.ConCare method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MedFuse method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.RETAIN method) (pyhealth.models.RNN method) (pyhealth.models.SafeDrug method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.TCN method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformersModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) get_padding_index() (pyhealth.tokenizer.Tokenizer method) get_parameter() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) get_params() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) get_patient() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) get_patient_file() (pyhealth.datasets.DREAMTDataset method) get_relevance_matrix() (pyhealth.interpret.methods.CheferRelevance method) get_relevance_tensor() (pyhealth.models.StageAttentionNet method) (pyhealth.models.Transformer method) get_submodule() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) get_tfm_token_classifier_64x4() (in module pyhealth.models) get_tfm_tokenizer_2x2x8() (in module pyhealth.models) get_tokens() (pyhealth.models.TFMTokenizer method) get_vocabulary_size() (pyhealth.tokenizer.Tokenizer method) GIM (class in pyhealth.interpret.methods) glob() (pyhealth.graph.knowledge_graph.Path method) glob_patterns (pyhealth.datasets.MIMIC4FHIR attribute) global_event_df (pyhealth.datasets.BaseDataset attribute) (pyhealth.datasets.BaseDataset property) (pyhealth.datasets.BMDHSDataset property) (pyhealth.datasets.ChestXray14Dataset property) (pyhealth.datasets.ClinVarDataset property) (pyhealth.datasets.COSMICDataset property) (pyhealth.datasets.COVID19CXRDataset property) (pyhealth.datasets.DREAMTDataset property) (pyhealth.datasets.EHRShotDataset property) (pyhealth.datasets.eICUDataset property) (pyhealth.datasets.FHIRDataset property) (pyhealth.datasets.MedicalTranscriptionsDataset property) (pyhealth.datasets.MIMIC3Dataset property) (pyhealth.datasets.MIMIC4Dataset property) (pyhealth.datasets.MIMIC4FHIR property) (pyhealth.datasets.OMOPDataset property) (pyhealth.datasets.PhysioNetDeIDDataset property) (pyhealth.datasets.SleepEDFDataset property) (pyhealth.datasets.Support2Dataset property) (pyhealth.datasets.TCGAPRADDataset property) (pyhealth.datasets.TUABDataset property) (pyhealth.datasets.TUEVDataset property) GPT2 (class in pyhealth.models) GraphCare (class in pyhealth.models) GraphProcessor (class in pyhealth.processors.graph_processor) GRASP (class in pyhealth.models) grasp_encoder() (pyhealth.models.GRASPLayer method) GRASPLayer (class in pyhealth.models) group() (pyhealth.graph.knowledge_graph.Path method) gumbel_softmax() (pyhealth.models.GRASPLayer method) gumbel_softmax_sample() (pyhealth.models.GRASPLayer method) H half() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) HALO (class in pyhealth.models) hardlink_to() (pyhealth.graph.knowledge_graph.Path method) has_entity() (pyhealth.graph.knowledge_graph.KnowledgeGraph method) hash_str() (in module pyhealth.datasets.utils) HistogramBinning (class in pyhealth.calib.calibration), [1] home() (pyhealth.graph.knowledge_graph.Path class method) hour (pyhealth.datasets.utils.datetime attribute) I ICD10CM (class in pyhealth.medcode) ICD10PROC (class in pyhealth.medcode) ICD9CM (class in pyhealth.medcode) ICD9PROC (class in pyhealth.medcode) id2entity (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) id2relation (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) IgnoreProcessor (class in pyhealth.processors) IMAGE (pyhealth.processors.ModalityType attribute) ImageProcessor (class in pyhealth.processors) increasing_ (pyhealth.models.califorest.IsotonicRegression attribute) index() (pyhealth.processors.ModalityType method) inference() (pyhealth.trainer.Trainer method) InHospitalMortalityMIMIC4 (class in pyhealth.tasks.in_hospital_mortality_mimic4) InnerMap (class in pyhealth.medcode) input_processors (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) input_schema (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) (pyhealth.tasks.base_task.BaseTask attribute) (pyhealth.tasks.benchmark_ehrshot.BenchmarkEHRShot attribute) (pyhealth.tasks.bmd_hs_disease_classification.BMDHSDiseaseClassification attribute), [1] (pyhealth.tasks.CancerMutationBurden attribute), [1] (pyhealth.tasks.CancerSurvivalPrediction attribute), [1] (pyhealth.tasks.ChestXray14BinaryClassification attribute), [1] (pyhealth.tasks.ChestXray14MultilabelClassification attribute), [1] (pyhealth.tasks.covid19_cxr_classification.COVID19CXRClassification attribute), [1], [2], [3] (pyhealth.tasks.DeIDNERTask attribute), [1] (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) (pyhealth.tasks.drug_recommendation.DrugRecommendationEICU attribute), [1] (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC3 attribute), [1] (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC4 attribute), [1] (pyhealth.tasks.generate_ehr.EHRGeneration attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 attribute) (pyhealth.tasks.in_hospital_mortality_mimic4.InHospitalMortalityMIMIC4 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictioneICU attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC3 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC4 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionOMOP attribute), [1] (pyhealth.tasks.medical_coding.MIMIC3ICD9Coding attribute) (pyhealth.tasks.medical_transcriptions_classification.MedicalTranscriptionsClassification attribute), [1] (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU2 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC3 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC4 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionOMOP attribute) (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 attribute), [1] (pyhealth.tasks.MPFClinicalPredictionTask attribute) (pyhealth.tasks.MutationPathogenicityPrediction attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionEICU attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC3 attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC4 attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionOMOP attribute), [1] (pyhealth.tasks.sleep_staging_v2.SleepStagingSleepEDF attribute), [1], [2], [3] (pyhealth.tasks.temple_university_EEG_tasks.EEGAbnormalTUAB attribute) (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV attribute) (pyhealth.tasks.VariantClassificationClinVar attribute), [1] insert() (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.TransitionLayer method) IntegratedGradients (class in pyhealth.interpret.methods) intercept_ (pyhealth.models.califorest.LogisticRegression attribute) interpolate_attribution_map() (in module pyhealth.interpret.utils) ipu() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) is_absolute() (pyhealth.graph.knowledge_graph.Path method) is_block_device() (pyhealth.graph.knowledge_graph.Path method) is_char_device() (pyhealth.graph.knowledge_graph.Path method) is_dir() (pyhealth.graph.knowledge_graph.Path method) is_fifo() (pyhealth.graph.knowledge_graph.Path method) is_file() (pyhealth.graph.knowledge_graph.Path method) is_homo_list() (in module pyhealth.datasets.utils) is_junction() (pyhealth.graph.knowledge_graph.Path method) is_mount() (pyhealth.graph.knowledge_graph.Path method) is_relative_to() (pyhealth.graph.knowledge_graph.Path method) is_reserved() (pyhealth.graph.knowledge_graph.Path method) is_socket() (pyhealth.graph.knowledge_graph.Path method) is_symlink() (pyhealth.graph.knowledge_graph.Path method) is_token() (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) isalnum() (pyhealth.processors.ModalityType method) isalpha() (pyhealth.processors.ModalityType method) isascii() (pyhealth.processors.ModalityType method) isdecimal() (pyhealth.processors.ModalityType method) isdigit() (pyhealth.processors.ModalityType method) isidentifier() (pyhealth.processors.ModalityType method) islower() (pyhealth.processors.ModalityType method) isnumeric() (pyhealth.processors.ModalityType method) isocalendar() (pyhealth.datasets.utils.datetime method) isoformat() (pyhealth.datasets.utils.datetime method) IsotonicRegression (class in pyhealth.models.califorest) isoweekday() (pyhealth.datasets.utils.datetime method) isprintable() (pyhealth.processors.ModalityType method) ISRUCDataset (class in pyhealth.datasets) isspace() (pyhealth.processors.ModalityType method) istitle() (pyhealth.processors.ModalityType method) isupper() (pyhealth.processors.ModalityType method) iter_patients() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) iterdir() (pyhealth.graph.knowledge_graph.Path method) J JambaEHR (class in pyhealth.models.jamba_ehr) JambaLayer (class in pyhealth.models.jamba_ehr) join() (pyhealth.processors.ModalityType method) joinpath() (pyhealth.graph.knowledge_graph.Path method) K KCal (class in pyhealth.calib.calibration), [1] KnowledgeGraph (class in pyhealth.graph.knowledge_graph) L LAB_CATEGORIES (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) (pyhealth.tasks.in_hospital_mortality_mimic4.InHospitalMortalityMIMIC4 attribute) (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 attribute) LAB_CATEGORY_NAMES (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 attribute) LAB_CATEGORY_ORDER (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) LABEL (class in pyhealth.calib.predictionset), [1] LABITEMS (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) (pyhealth.tasks.in_hospital_mortality_mimic4.InHospitalMortalityMIMIC4 attribute) (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 attribute) lchmod() (pyhealth.graph.knowledge_graph.Path method) LengthOfStayPredictioneICU (class in pyhealth.tasks.length_of_stay_prediction) LengthOfStayPredictionMIMIC3 (class in pyhealth.tasks.length_of_stay_prediction) LengthOfStayPredictionMIMIC4 (class in pyhealth.tasks.length_of_stay_prediction) LengthOfStayPredictionOMOP (class in pyhealth.tasks.length_of_stay_prediction) LimeExplainer (in module pyhealth.interpret.methods.lime) list_nested_levels() (in module pyhealth.datasets.utils) ljust() (pyhealth.processors.ModalityType method) load() (pyhealth.medcode.ATC class method) (pyhealth.medcode.CCSCM class method) (pyhealth.medcode.CCSPROC class method) (pyhealth.medcode.CrossMap class method) (pyhealth.medcode.ICD10CM class method) (pyhealth.medcode.ICD10PROC class method) (pyhealth.medcode.ICD9CM class method) (pyhealth.medcode.ICD9PROC class method) (pyhealth.medcode.InnerMap class method) (pyhealth.medcode.NDC class method) (pyhealth.medcode.RxNorm class method) (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) load_ckpt() (pyhealth.trainer.Trainer method) load_data() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) load_embedding_weights() (in module pyhealth.models) load_model() (pyhealth.models.CorGAN method) (pyhealth.models.MedGAN method) load_pretrained_weights() (pyhealth.models.BIOT method) (pyhealth.models.TFMTokenizer method) load_processors() (in module pyhealth.datasets.utils) load_state_dict() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.SampleDataset method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) load_table() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) LogisticRegression (class in pyhealth.models) (class in pyhealth.models.califorest) lookup() (pyhealth.medcode.ATC method) (pyhealth.medcode.CCSCM method) (pyhealth.medcode.CCSPROC method) (pyhealth.medcode.ICD10CM method) (pyhealth.medcode.ICD10PROC method) (pyhealth.medcode.ICD9CM method) (pyhealth.medcode.ICD9PROC method) (pyhealth.medcode.InnerMap method) (pyhealth.medcode.NDC method) (pyhealth.medcode.RxNorm method) loss_function() (pyhealth.models.VAE static method) lower() (pyhealth.processors.ModalityType method) lstat() (pyhealth.graph.knowledge_graph.Path method) lstrip() (pyhealth.processors.ModalityType method) M maketrans() (pyhealth.processors.ModalityType static method) MambaBlock (class in pyhealth.models) (class in pyhealth.models.jamba_ehr) map() (pyhealth.medcode.CrossMap method) masked_prediction() (pyhealth.models.TFM_TOKEN_Classifier method) match() (pyhealth.graph.knowledge_graph.Path method) max (pyhealth.datasets.utils.datetime attribute) max_len (pyhealth.tasks.MPFClinicalPredictionTask attribute) mean_pooling() (pyhealth.models.LogisticRegression static method) (pyhealth.models.MLP static method) MedFuse (class in pyhealth.models) MedFuseLayer (class in pyhealth.models) MedGAN (class in pyhealth.models) MedicalTranscriptionsClassification (class in pyhealth.tasks.medical_transcriptions_classification) MedicalTranscriptionsDataset (class in pyhealth.datasets) MedLink (class in pyhealth.models) MICRON (class in pyhealth.models) micron (pyhealth.models.MICRON attribute) MICRONLayer (class in pyhealth.models) microsecond (pyhealth.datasets.utils.datetime attribute) MIMIC3Dataset (class in pyhealth.datasets) MIMIC3ICD9Coding (class in pyhealth.tasks.medical_coding) MIMIC4Dataset (class in pyhealth.datasets) MIMIC4FHIR (class in pyhealth.datasets) MIMICExtractDataset (class in pyhealth.datasets) min (pyhealth.datasets.utils.datetime attribute) min_visits (pyhealth.tasks.generate_ehr.EHRGeneration attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 attribute) minute (pyhealth.datasets.utils.datetime attribute) miscoverage_overall_ps() (in module pyhealth.metrics.prediction_set) miscoverage_ps() (in module pyhealth.metrics.prediction_set) mkdir() (pyhealth.graph.knowledge_graph.Path method) MLP (class in pyhealth.models) modality() (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) ModalityType (class in pyhealth.processors) module pyhealth.datasets.splitter pyhealth.datasets.utils pyhealth.graph.knowledge_graph pyhealth.interpret.utils pyhealth.metrics.calibration pyhealth.metrics.prediction_set pyhealth.models.califorest pyhealth.models.jamba_ehr pyhealth.processors.graph_processor pyhealth.tokenizer modules() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) MoleRec (class in pyhealth.models) MoleRecLayer (class in pyhealth.models) month (pyhealth.datasets.utils.datetime attribute) MortalityPredictionEICU (class in pyhealth.tasks.mortality_prediction) MortalityPredictionEICU2 (class in pyhealth.tasks.mortality_prediction) MortalityPredictionMIMIC3 (class in pyhealth.tasks.mortality_prediction) MortalityPredictionMIMIC4 (class in pyhealth.tasks.mortality_prediction) MortalityPredictionOMOP (class in pyhealth.tasks.mortality_prediction) MortalityPredictionStageNetMIMIC4 (class in pyhealth.tasks.mortality_prediction_stagenet_mimic4) MPFClinicalPredictionTask (class in pyhealth.tasks) mtia() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) multiclass_metrics_fn() (in module pyhealth.metrics.multiclass) MultiClassLabelProcessor (class in pyhealth.processors) MultiHotProcessor (class in pyhealth.processors) multilabel_metrics_fn() (in module pyhealth.metrics.multilabel) MultiLabelProcessor (class in pyhealth.processors) MultimodalAdaCare (class in pyhealth.models) MultimodalRETAIN (class in pyhealth.models) MultimodalRNN (class in pyhealth.models) multiprocessing_context (pyhealth.datasets.utils.DataLoader property) MutationPathogenicityPrediction (class in pyhealth.tasks) N n_classes_ (pyhealth.models.califorest.RandomForestClassifier attribute) n_features_in_ (pyhealth.models.califorest.LogisticRegression attribute) (pyhealth.models.califorest.RandomForestClassifier attribute) n_iter_ (pyhealth.models.califorest.LogisticRegression attribute) n_outputs_ (pyhealth.models.califorest.RandomForestClassifier attribute) name (pyhealth.graph.knowledge_graph.Path property) named_buffers() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) named_children() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) 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(pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) named_modules() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) named_parameters() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) 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(pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) NDC (class in pyhealth.medcode) NeighborhoodLabel (class in pyhealth.calib.predictionset), [1] neighbors() (pyhealth.graph.knowledge_graph.KnowledgeGraph method) NestedFloatsProcessor (class in pyhealth.processors) NestedSequenceProcessor (class in pyhealth.processors) no_weight_decay() (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) normalize_attribution() (in module pyhealth.interpret.utils) now() (pyhealth.datasets.utils.datetime method) num_entities (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) (pyhealth.graph.knowledge_graph.KnowledgeGraph property) num_relations (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) (pyhealth.graph.knowledge_graph.KnowledgeGraph property) num_triples (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) (pyhealth.graph.knowledge_graph.KnowledgeGraph property) num_workers (pyhealth.datasets.utils.DataLoader attribute) NUMERIC (pyhealth.processors.ModalityType attribute) O OMOPDataset (class in pyhealth.datasets) on_demand_bytes (pyhealth.datasets.SampleDataset property) (pyhealth.datasets.splitter.SampleDataset property) (pyhealth.models.califorest.SampleDataset property) (pyhealth.models.jamba_ehr.SampleDataset property) oob_decision_function_ (pyhealth.models.califorest.RandomForestClassifier attribute) oob_score_ (pyhealth.models.califorest.RandomForestClassifier attribute) open() (pyhealth.graph.knowledge_graph.Path method) output_processors (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) output_schema (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) (pyhealth.tasks.base_task.BaseTask attribute) (pyhealth.tasks.benchmark_ehrshot.BenchmarkEHRShot attribute) (pyhealth.tasks.bmd_hs_disease_classification.BMDHSDiseaseClassification attribute), [1] (pyhealth.tasks.CancerMutationBurden attribute), [1] (pyhealth.tasks.CancerSurvivalPrediction attribute), [1] (pyhealth.tasks.ChestXray14BinaryClassification attribute), [1] (pyhealth.tasks.ChestXray14MultilabelClassification attribute), [1] (pyhealth.tasks.covid19_cxr_classification.COVID19CXRClassification attribute), [1], [2], [3] (pyhealth.tasks.DeIDNERTask attribute), [1] (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) (pyhealth.tasks.drug_recommendation.DrugRecommendationEICU attribute), [1] (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC3 attribute), [1] (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC4 attribute), [1] (pyhealth.tasks.generate_ehr.EHRGeneration attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 attribute) (pyhealth.tasks.in_hospital_mortality_mimic4.InHospitalMortalityMIMIC4 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictioneICU attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC3 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC4 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionOMOP attribute), [1] (pyhealth.tasks.medical_coding.MIMIC3ICD9Coding attribute) (pyhealth.tasks.medical_transcriptions_classification.MedicalTranscriptionsClassification attribute), [1] (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU2 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC3 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC4 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionOMOP attribute) (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 attribute), [1] (pyhealth.tasks.MPFClinicalPredictionTask attribute) (pyhealth.tasks.MutationPathogenicityPrediction attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionEICU attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC3 attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC4 attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionOMOP attribute), [1] (pyhealth.tasks.sleep_staging_v2.SleepStagingSleepEDF attribute), [1], [2], [3] (pyhealth.tasks.temple_university_EEG_tasks.EEGAbnormalTUAB attribute) (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV attribute) (pyhealth.tasks.VariantClassificationClinVar attribute), [1] owner() (pyhealth.graph.knowledge_graph.Path method) P PAD (pyhealth.processors.NestedSequenceProcessor attribute) (pyhealth.processors.SequenceProcessor attribute) (pyhealth.processors.StageNetProcessor attribute) pad() (pyhealth.models.SafeDrugLayer method) pad_sequence() (in module pyhealth.datasets.utils) padyear() (in module pyhealth.datasets.utils) parameters() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) parent (pyhealth.graph.knowledge_graph.Path property) parents (pyhealth.graph.knowledge_graph.Path property) parse_basic_info() (pyhealth.datasets.MIMICExtractDataset method) parse_c() (pyhealth.datasets.MIMICExtractDataset method) parse_chartevents() (pyhealth.datasets.MIMICExtractDataset method) parse_diagnoses_icd() (pyhealth.datasets.MIMICExtractDataset method) parse_interventions() (pyhealth.datasets.MIMICExtractDataset method) parse_labevents() (pyhealth.datasets.MIMICExtractDataset method) parse_patient_id() (pyhealth.datasets.SHHSDataset method) parse_vitals_labs() (pyhealth.datasets.MIMICExtractDataset method) partition() (pyhealth.processors.ModalityType method) parts (pyhealth.graph.knowledge_graph.Path property) Path (class in pyhealth.graph.knowledge_graph) Patient (class in pyhealth.data) patient_id (pyhealth.data.Patient attribute) patient_linkage_mimic3_fn() (in module pyhealth.tasks.patient_linkage) patient_to_index (pyhealth.datasets.CardiologyDataset attribute) (pyhealth.datasets.MIMICExtractDataset attribute) (pyhealth.datasets.OMOPDataset attribute) (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.SHHSDataset attribute) (pyhealth.datasets.SleepEDFDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.datasets.TUABDataset attribute) (pyhealth.datasets.TUEVDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) PhysioNetDeIDDataset (class in pyhealth.datasets) pin_memory (pyhealth.datasets.utils.DataLoader attribute) pin_memory_device (pyhealth.datasets.utils.DataLoader attribute) pop() (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.TransitionLayer method) pre_filter() (pyhealth.tasks.base_task.BaseTask method) (pyhealth.tasks.benchmark_ehrshot.BenchmarkEHRShot method) (pyhealth.tasks.bmd_hs_disease_classification.BMDHSDiseaseClassification method) (pyhealth.tasks.CancerMutationBurden method) (pyhealth.tasks.CancerSurvivalPrediction method) (pyhealth.tasks.ChestXray14BinaryClassification method) (pyhealth.tasks.ChestXray14MultilabelClassification method) (pyhealth.tasks.covid19_cxr_classification.COVID19CXRClassification method), [1] (pyhealth.tasks.DeIDNERTask method) (pyhealth.tasks.dka.DKAPredictionMIMIC4 method) (pyhealth.tasks.drug_recommendation.DrugRecommendationEICU method) (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC3 method) (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC4 method) (pyhealth.tasks.generate_ehr.EHRGeneration method) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 method) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 method) (pyhealth.tasks.in_hospital_mortality_mimic4.InHospitalMortalityMIMIC4 method) (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictioneICU method) (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC3 method) (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC4 method) (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionOMOP method) (pyhealth.tasks.medical_coding.MIMIC3ICD9Coding method) (pyhealth.tasks.medical_transcriptions_classification.MedicalTranscriptionsClassification method) (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU method) (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU2 method) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC3 method) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC4 method) (pyhealth.tasks.mortality_prediction.MortalityPredictionOMOP method) (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 method) (pyhealth.tasks.MPFClinicalPredictionTask method) (pyhealth.tasks.MutationPathogenicityPrediction method) (pyhealth.tasks.readmission_prediction.ReadmissionPredictionEICU method) (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC3 method) (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC4 method) (pyhealth.tasks.readmission_prediction.ReadmissionPredictionOMOP method) (pyhealth.tasks.sleep_staging_v2.SleepStagingSleepEDF method), [1] (pyhealth.tasks.temple_university_EEG_tasks.EEGAbnormalTUAB method) (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV method) (pyhealth.tasks.VariantClassificationClinVar method) predict() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) (pyhealth.models.SdohClassifier method) predict_log_proba() (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) predict_proba() (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) predict_proba_numpy() (pyhealth.models.califorest.CaliForest method) prefetch_factor (pyhealth.datasets.utils.DataLoader attribute) prepare_metadata() (pyhealth.datasets.ClinVarDataset static method) (pyhealth.datasets.COSMICDataset static method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.TCGAPRADDataset static method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) prepare_metadata_cassette() (pyhealth.datasets.SleepEDFDataset method) prepare_metadata_telemetry() (pyhealth.datasets.SleepEDFDataset method) prepare_y_prob() (pyhealth.models.AdaCare method) (pyhealth.models.Agent method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.ConCare method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MedFuse method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.RETAIN method) (pyhealth.models.RNN method) (pyhealth.models.SafeDrug method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.TCN method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformersModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) prepared_tables_dir (pyhealth.datasets.FHIRDataset property) (pyhealth.datasets.MIMIC4FHIR property) preprocess_noteevents() (pyhealth.datasets.MIMIC3Dataset method) preprocess_person() (pyhealth.datasets.OMOPDataset method) preprocess_recordings() (pyhealth.datasets.BMDHSDataset method) process() (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) process_EEG_data() (pyhealth.datasets.CardiologyDataset method) (pyhealth.datasets.ISRUCDataset method) (pyhealth.datasets.SHHSDataset method) process_temporal() (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) PromptEHR (class in pyhealth.models) pyhealth.datasets.splitter module pyhealth.datasets.utils module pyhealth.graph.knowledge_graph module pyhealth.interpret.utils module pyhealth.metrics.calibration module pyhealth.metrics.prediction_set module pyhealth.models.califorest module pyhealth.models.jamba_ehr module pyhealth.processors.graph_processor module pyhealth.tokenizer module R RandomForestClassifier (class in pyhealth.models.califorest) RawProcessor (class in pyhealth.processors) read_and_process_edf() (pyhealth.tasks.temple_university_EEG_tasks.EEGAbnormalTUAB static method) read_bytes() (pyhealth.graph.knowledge_graph.Path method) read_text() (pyhealth.graph.knowledge_graph.Path method) readEDF() (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV static method) readlink() (pyhealth.graph.knowledge_graph.Path method) ReadmissionPredictionEICU (class in pyhealth.tasks.readmission_prediction) ReadmissionPredictionMIMIC3 (class in pyhealth.tasks.readmission_prediction) ReadmissionPredictionMIMIC4 (class in pyhealth.tasks.readmission_prediction) ReadmissionPredictionOMOP (class in pyhealth.tasks.readmission_prediction) record_to_index (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) register_backward_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_buffer() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_forward_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_forward_pre_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_full_backward_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_full_backward_pre_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_load_state_dict_post_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_load_state_dict_pre_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_module() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_parameter() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_processor() (in module pyhealth.processors.graph_processor) register_state_dict_post_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) register_state_dict_pre_hook() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) RegressionLabelProcessor (class in pyhealth.processors) rejection_rate() (in module pyhealth.metrics.prediction_set) relation2id (pyhealth.graph.knowledge_graph.KnowledgeGraph attribute) relative_to() (pyhealth.graph.knowledge_graph.Path method) RemovalBasedMetric (class in pyhealth.metrics.interpretability.base) remove() (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.StageNetProcessor method) removeprefix() (pyhealth.processors.ModalityType method) removesuffix() (pyhealth.processors.ModalityType method) rename() (pyhealth.graph.knowledge_graph.Path method) replace() (pyhealth.datasets.utils.datetime method) (pyhealth.graph.knowledge_graph.Path method) (pyhealth.processors.ModalityType method) requires_grad_() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) ResBlock2D (class in pyhealth.models) reset() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) reset_state_dict() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) resolution (pyhealth.datasets.utils.datetime attribute) resolve() (pyhealth.graph.knowledge_graph.Path method) resource_specs (pyhealth.datasets.MIMIC4FHIR attribute) RETAIN (class in pyhealth.models) retain() (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.StageNetProcessor method) RETAINLayer (class in pyhealth.models) reverse_x() (pyhealth.models.RETAINLayer static method) rfind() (pyhealth.processors.ModalityType method) rglob() (pyhealth.graph.knowledge_graph.Path method) rindex() (pyhealth.processors.ModalityType method) rjust() (pyhealth.processors.ModalityType method) rmdir() (pyhealth.graph.knowledge_graph.Path method) RNN (class in pyhealth.models) RNNLayer (class in pyhealth.models) root (pyhealth.datasets.BaseDataset attribute) (pyhealth.datasets.BMDHSDataset attribute) (pyhealth.datasets.ChestXray14Dataset attribute) (pyhealth.datasets.ClinVarDataset attribute) (pyhealth.datasets.COSMICDataset attribute) (pyhealth.datasets.COVID19CXRDataset attribute) (pyhealth.datasets.DREAMTDataset attribute) (pyhealth.datasets.EHRShotDataset attribute) (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MedicalTranscriptionsDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.PhysioNetDeIDDataset attribute) (pyhealth.datasets.Support2Dataset attribute) (pyhealth.datasets.TCGAPRADDataset attribute) (pyhealth.graph.knowledge_graph.Path property) rpartition() (pyhealth.processors.ModalityType method) rsplit() (pyhealth.processors.ModalityType method) rstrip() (pyhealth.processors.ModalityType method) RxNorm (class in pyhealth.medcode) S SafeDrug (class in pyhealth.models) SafeDrugLayer (class in pyhealth.models) samefile() (pyhealth.graph.knowledge_graph.Path method) sample_balanced() (in module pyhealth.datasets.splitter) sample_gumbel() (pyhealth.models.GRASPLayer method) SampleDataset (class in pyhealth.datasets) (class in pyhealth.datasets.splitter) (class in pyhealth.models.califorest) (class in pyhealth.models.jamba_ehr) sampler (pyhealth.datasets.utils.DataLoader attribute) samples (pyhealth.datasets.CardiologyDataset attribute) (pyhealth.datasets.MIMICExtractDataset attribute) (pyhealth.datasets.OMOPDataset attribute) (pyhealth.datasets.SHHSDataset attribute) (pyhealth.datasets.SleepEDFDataset attribute) (pyhealth.datasets.TUABDataset attribute) (pyhealth.datasets.TUEVDataset attribute) sampling() (pyhealth.models.GAN method) (pyhealth.models.VAE method) save() (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) save_attn_grad() (pyhealth.models.StageNetAttentionLayer method) save_ckpt() (pyhealth.trainer.Trainer method) save_model() (pyhealth.models.CorGAN method) (pyhealth.models.MedGAN method) save_processors() (in module pyhealth.datasets.utils) schema() (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) score() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) SCRIB (class in pyhealth.calib.predictionset), [1] SdohClassifier (class in pyhealth.models) search() (pyhealth.models.MedLink method) second (pyhealth.datasets.utils.datetime attribute) sensitive_attributes_from_patient_ids() (in module pyhealth.metrics.fairness_utils) SequenceProcessor (class in pyhealth.processors) set_activation_hooks() (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.TransformerLayer method) set_attention_hooks() (pyhealth.models.StageAttentionNet method) (pyhealth.models.Transformer method) set_batch_size() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) set_drop_last() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) set_epoch() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) set_extra_state() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) set_fit_request() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) set_num_workers() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) set_output() (pyhealth.models.califorest.IsotonicRegression method) set_params() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) set_score_request() (pyhealth.models.califorest.IsotonicRegression method) (pyhealth.models.califorest.LogisticRegression method) (pyhealth.models.califorest.RandomForestClassifier method) set_shuffle() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) set_submodule() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) set_task() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) ShapExplainer (in module pyhealth.interpret.methods.shap) share_memory() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) SHHSDataset (class in pyhealth.datasets) show_cam_on_image() (in module pyhealth.interpret.utils) SIGNAL (pyhealth.processors.ModalityType attribute) SignalProcessor (class in pyhealth.processors) SinusoidalTimeEmbedding (class in pyhealth.models) size() (in module pyhealth.metrics.prediction_set) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) sleep_staging_isruc_fn() (in module pyhealth.tasks.sleep_staging) sleep_staging_shhs_fn() (in module pyhealth.tasks.sleep_staging) sleep_staging_sleepedf_fn() (in module pyhealth.tasks.sleep_staging) SleepEDFDataset (class in pyhealth.datasets) SleepStagingSleepEDF (class in pyhealth.tasks.sleep_staging_v2), [1] SparcNet (class in pyhealth.models) sparsify() (pyhealth.models.califorest.LogisticRegression method) spatial() (pyhealth.processors.AudioProcessor method) (pyhealth.processors.BinaryLabelProcessor method) (pyhealth.processors.FeatureProcessor method) (pyhealth.processors.graph_processor.FeatureProcessor method) (pyhealth.processors.graph_processor.GraphProcessor method) (pyhealth.processors.IgnoreProcessor method) (pyhealth.processors.ImageProcessor method) (pyhealth.processors.MultiClassLabelProcessor method) (pyhealth.processors.MultiHotProcessor method) (pyhealth.processors.MultiLabelProcessor method) (pyhealth.processors.NestedFloatsProcessor method) (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.RawProcessor method) (pyhealth.processors.RegressionLabelProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.SignalProcessor method) (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TensorProcessor method) (pyhealth.processors.TextProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TimeseriesProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) split() (pyhealth.processors.ModalityType method) split_by_patient() (in module pyhealth.datasets.splitter) split_by_patient_conformal() (in module pyhealth.datasets.splitter) split_by_patient_conformal_tuh() (in module pyhealth.datasets.splitter) split_by_patient_tuh() (in module pyhealth.datasets.splitter) split_by_sample() (in module pyhealth.datasets.splitter) split_by_sample_conformal() (in module pyhealth.datasets.splitter) split_by_sample_conformal_tuh() (in module pyhealth.datasets.splitter) split_by_sample_tuh() (in module pyhealth.datasets.splitter) split_by_visit() (in module pyhealth.datasets.splitter) split_by_visit_conformal() (in module pyhealth.datasets.splitter) splitlines() (pyhealth.processors.ModalityType method) StageAttentionNet (class in pyhealth.models) StageNet (class in pyhealth.models) StageNetAttentionLayer (class in pyhealth.models) StageNetLayer (class in pyhealth.models) StageNetProcessor (class in pyhealth.processors) StageNetTensorProcessor (class in pyhealth.processors) standardize() (pyhealth.medcode.ATC static method) (pyhealth.medcode.CCSCM static method) (pyhealth.medcode.CCSPROC static method) (pyhealth.medcode.ICD10CM static method) (pyhealth.medcode.ICD10PROC static method) (pyhealth.medcode.ICD9CM static method) (pyhealth.medcode.ICD9PROC static method) (pyhealth.medcode.InnerMap static method) (pyhealth.medcode.NDC static method) (pyhealth.medcode.RxNorm static method) startswith() (pyhealth.processors.ModalityType method) stat() (pyhealth.graph.knowledge_graph.KnowledgeGraph method) (pyhealth.graph.knowledge_graph.Path method) (pyhealth.medcode.ATC method) (pyhealth.medcode.CCSCM method) (pyhealth.medcode.CCSPROC method) (pyhealth.medcode.ICD10CM method) (pyhealth.medcode.ICD10PROC method) (pyhealth.medcode.ICD9CM method) (pyhealth.medcode.ICD9PROC method) (pyhealth.medcode.InnerMap method) (pyhealth.medcode.NDC method) (pyhealth.medcode.RxNorm method) state_dict() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.SampleDataset method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) statistical_parity_difference() (in module pyhealth.metrics.fairness_utils) stats() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.BMDHSDataset method) (pyhealth.datasets.ChestXray14Dataset method) (pyhealth.datasets.ClinVarDataset method) (pyhealth.datasets.COSMICDataset method) (pyhealth.datasets.COVID19CXRDataset method) (pyhealth.datasets.DREAMTDataset method) (pyhealth.datasets.EHRShotDataset method) (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.FHIRDataset method) (pyhealth.datasets.MedicalTranscriptionsDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.MIMIC4FHIR method) (pyhealth.datasets.OMOPDataset method) (pyhealth.datasets.PhysioNetDeIDDataset method) (pyhealth.datasets.SleepEDFDataset method) (pyhealth.datasets.Support2Dataset method) (pyhealth.datasets.TCGAPRADDataset method) (pyhealth.datasets.TUABDataset method) (pyhealth.datasets.TUEVDataset method) stem (pyhealth.graph.knowledge_graph.Path property) step() (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) strftime() (pyhealth.datasets.utils.datetime method) strip() (pyhealth.processors.ModalityType method) strptime() (in module pyhealth.datasets.utils) (pyhealth.datasets.utils.datetime method) subgraph() (pyhealth.graph.knowledge_graph.KnowledgeGraph method) subset() (pyhealth.datasets.SampleDataset method) (pyhealth.datasets.splitter.SampleDataset method) (pyhealth.models.califorest.SampleDataset method) (pyhealth.models.jamba_ehr.SampleDataset method) SufficiencyMetric (class in pyhealth.metrics.interpretability.sufficiency) suffix (pyhealth.graph.knowledge_graph.Path property) suffixes (pyhealth.graph.knowledge_graph.Path property) sum_pooling() (pyhealth.models.MLP static method) Support2Dataset (class in pyhealth.datasets) SUPPORTED_CXR_BACKBONES (pyhealth.models.MedFuseLayer attribute) swapcase() (pyhealth.processors.ModalityType method) symlink_to() (pyhealth.graph.knowledge_graph.Path method) T T_destination (pyhealth.calib.calibration.DirichletCalibration attribute), [1] (pyhealth.calib.calibration.HistogramBinning attribute), [1] (pyhealth.calib.calibration.KCal attribute), [1] (pyhealth.calib.calibration.TemperatureScaling attribute), [1] (pyhealth.calib.predictionset.ClusterLabel attribute), [1] (pyhealth.calib.predictionset.CovariateLabel attribute), [1] (pyhealth.calib.predictionset.FavMac attribute), [1] (pyhealth.calib.predictionset.LABEL attribute), [1] (pyhealth.calib.predictionset.NeighborhoodLabel attribute), [1] (pyhealth.calib.predictionset.SCRIB attribute), [1] (pyhealth.models.AdaCare attribute) (pyhealth.models.AdaCareLayer attribute) (pyhealth.models.Agent attribute) (pyhealth.models.AgentLayer attribute) (pyhealth.models.BaseModel attribute) (pyhealth.models.BIOT attribute) (pyhealth.models.califorest.BaseModel attribute) (pyhealth.models.califorest.CaliForest attribute) (pyhealth.models.CNN attribute) (pyhealth.models.CNNLayer attribute) (pyhealth.models.ConCare attribute) (pyhealth.models.ConCareLayer attribute) (pyhealth.models.ContraWR attribute) (pyhealth.models.CorGAN attribute) (pyhealth.models.Deepr attribute) (pyhealth.models.DeeprLayer attribute) (pyhealth.models.DenseBlock attribute) (pyhealth.models.DenseLayer attribute) (pyhealth.models.EHRMamba attribute) (pyhealth.models.EHRMambaCEHR attribute) (pyhealth.models.GAMENet attribute) (pyhealth.models.GAMENetLayer attribute) (pyhealth.models.GAN attribute) (pyhealth.models.GAT attribute) (pyhealth.models.GCN attribute) (pyhealth.models.GPT2 attribute) (pyhealth.models.GraphCare attribute) (pyhealth.models.GRASP attribute) (pyhealth.models.GRASPLayer attribute) (pyhealth.models.HALO attribute) (pyhealth.models.jamba_ehr.BaseModel attribute) (pyhealth.models.jamba_ehr.EmbeddingModel attribute) (pyhealth.models.jamba_ehr.JambaEHR attribute) (pyhealth.models.jamba_ehr.JambaLayer attribute) (pyhealth.models.jamba_ehr.MambaBlock attribute) (pyhealth.models.jamba_ehr.TransformerBlock attribute) (pyhealth.models.LogisticRegression attribute) (pyhealth.models.MambaBlock attribute) (pyhealth.models.MedFuse attribute) (pyhealth.models.MedFuseLayer attribute) (pyhealth.models.MedGAN attribute) (pyhealth.models.MedLink attribute) (pyhealth.models.MICRON attribute) (pyhealth.models.MICRONLayer attribute) (pyhealth.models.MLP attribute) (pyhealth.models.MoleRec attribute) (pyhealth.models.MoleRecLayer attribute) (pyhealth.models.MultimodalAdaCare attribute) (pyhealth.models.MultimodalRETAIN attribute) (pyhealth.models.MultimodalRNN attribute) (pyhealth.models.PromptEHR attribute) (pyhealth.models.ResBlock2D attribute) (pyhealth.models.RETAIN attribute) (pyhealth.models.RETAINLayer attribute) (pyhealth.models.RNN attribute) (pyhealth.models.RNNLayer attribute) (pyhealth.models.SafeDrug attribute) (pyhealth.models.SafeDrugLayer attribute) (pyhealth.models.SdohClassifier attribute) (pyhealth.models.SinusoidalTimeEmbedding attribute) (pyhealth.models.SparcNet attribute) (pyhealth.models.StageAttentionNet attribute) (pyhealth.models.StageNet attribute) (pyhealth.models.StageNetAttentionLayer attribute) (pyhealth.models.StageNetLayer attribute) (pyhealth.models.TCN attribute) (pyhealth.models.TCNLayer attribute) (pyhealth.models.TextEmbedding attribute) (pyhealth.models.TFM_TOKEN_Classifier attribute) (pyhealth.models.TFM_VQVAE2_deep attribute) (pyhealth.models.TFMTokenizer attribute) (pyhealth.models.Transformer attribute) (pyhealth.models.TransformerDeID attribute) (pyhealth.models.TransformerLayer attribute) (pyhealth.models.TransformersModel attribute) (pyhealth.models.TransitionLayer attribute) (pyhealth.models.UnifiedMultimodalEmbeddingModel attribute) (pyhealth.models.VAE attribute) (pyhealth.models.VisionEmbeddingModel attribute) tables (pyhealth.datasets.BaseDataset attribute) (pyhealth.datasets.EHRShotDataset attribute) (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.Support2Dataset attribute) task (pyhealth.datasets.CardiologyDataset attribute) (pyhealth.datasets.MIMICExtractDataset attribute) (pyhealth.datasets.OMOPDataset attribute) (pyhealth.datasets.SHHSDataset attribute) (pyhealth.datasets.SleepEDFDataset attribute) (pyhealth.datasets.TUABDataset attribute) (pyhealth.datasets.TUEVDataset attribute) task_name (pyhealth.datasets.SampleDataset attribute) (pyhealth.datasets.splitter.SampleDataset attribute) (pyhealth.models.califorest.SampleDataset attribute) (pyhealth.models.jamba_ehr.SampleDataset attribute) (pyhealth.tasks.base_task.BaseTask attribute) (pyhealth.tasks.benchmark_ehrshot.BenchmarkEHRShot attribute) (pyhealth.tasks.bmd_hs_disease_classification.BMDHSDiseaseClassification attribute), [1] (pyhealth.tasks.CancerMutationBurden attribute), [1] (pyhealth.tasks.CancerSurvivalPrediction attribute), [1] (pyhealth.tasks.ChestXray14BinaryClassification attribute), [1] (pyhealth.tasks.ChestXray14MultilabelClassification attribute), [1] (pyhealth.tasks.covid19_cxr_classification.COVID19CXRClassification attribute), [1], [2], [3] (pyhealth.tasks.DeIDNERTask attribute), [1] (pyhealth.tasks.dka.DKAPredictionMIMIC4 attribute) (pyhealth.tasks.drug_recommendation.DrugRecommendationEICU attribute), [1] (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC3 attribute), [1] (pyhealth.tasks.drug_recommendation.DrugRecommendationMIMIC4 attribute), [1] (pyhealth.tasks.generate_ehr.EHRGeneration attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC3 attribute) (pyhealth.tasks.generate_ehr.EHRGenerationMIMIC4 attribute) (pyhealth.tasks.in_hospital_mortality_mimic4.InHospitalMortalityMIMIC4 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictioneICU attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC3 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionMIMIC4 attribute), [1] (pyhealth.tasks.length_of_stay_prediction.LengthOfStayPredictionOMOP attribute), [1] (pyhealth.tasks.medical_coding.MIMIC3ICD9Coding attribute) (pyhealth.tasks.medical_transcriptions_classification.MedicalTranscriptionsClassification attribute), [1] (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionEICU2 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC3 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionMIMIC4 attribute) (pyhealth.tasks.mortality_prediction.MortalityPredictionOMOP attribute) (pyhealth.tasks.mortality_prediction_stagenet_mimic4.MortalityPredictionStageNetMIMIC4 attribute), [1] (pyhealth.tasks.MPFClinicalPredictionTask attribute) (pyhealth.tasks.MutationPathogenicityPrediction attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionEICU attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC3 attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionMIMIC4 attribute), [1] (pyhealth.tasks.readmission_prediction.ReadmissionPredictionOMOP attribute), [1] (pyhealth.tasks.sleep_staging_v2.SleepStagingSleepEDF attribute), [1], [2], [3] (pyhealth.tasks.temple_university_EEG_tasks.EEGAbnormalTUAB attribute) (pyhealth.tasks.temple_university_EEG_tasks.EEGEventsTUEV attribute) (pyhealth.tasks.VariantClassificationClinVar attribute), [1] tasks (pyhealth.tasks.benchmark_ehrshot.BenchmarkEHRShot attribute) TCGAPRADDataset (class in pyhealth.datasets) TCN (class in pyhealth.models) TCNLayer (class in pyhealth.models) TemperatureScaling (class in pyhealth.calib.calibration), [1] TemporalFeatureProcessor (class in pyhealth.processors) TemporalTimeseriesProcessor (class in pyhealth.processors) TensorProcessor (class in pyhealth.processors) TEXT (pyhealth.processors.ModalityType attribute) TextEmbedding (class in pyhealth.models) TextProcessor (class in pyhealth.processors) TFM_TOKEN_Classifier (class in pyhealth.models) TFM_VQVAE2_deep (class in pyhealth.models) TFMTokenizer (class in pyhealth.models) time() (pyhealth.datasets.utils.datetime method) TimeImageProcessor (class in pyhealth.processors) timeout (pyhealth.datasets.utils.DataLoader attribute) TimeseriesProcessor (class in pyhealth.processors) timestamp (pyhealth.data.Event attribute), [1] timestamp() (pyhealth.datasets.utils.datetime method) timetuple() (pyhealth.datasets.utils.datetime method) timetz() (pyhealth.datasets.utils.datetime method) title() (pyhealth.processors.ModalityType method) TMB_THRESHOLD (pyhealth.tasks.CancerMutationBurden attribute), [1] to() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) to_empty() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) to_evaluation_dataframe() (in module pyhealth.tasks.generate_ehr) today() (pyhealth.datasets.utils.datetime method) tokenize() (pyhealth.models.TFM_VQVAE2_deep method) Tokenizer (class in pyhealth.tokenizer) tokens() (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.StageNetProcessor method) toordinal() (pyhealth.datasets.utils.datetime method) torch_stft() (pyhealth.models.ContraWR method) touch() (pyhealth.graph.knowledge_graph.Path method) train() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) (pyhealth.trainer.Trainer method) train_model() (pyhealth.models.CorGAN method) (pyhealth.models.GPT2 method) (pyhealth.models.HALO method) (pyhealth.models.MedGAN method) (pyhealth.models.PromptEHR method) Trainer (class in pyhealth.trainer) training (pyhealth.calib.calibration.DirichletCalibration attribute), [1] (pyhealth.calib.calibration.HistogramBinning attribute), [1] (pyhealth.calib.calibration.KCal attribute), [1] (pyhealth.calib.calibration.TemperatureScaling attribute), [1] (pyhealth.calib.predictionset.ClusterLabel attribute), [1] (pyhealth.calib.predictionset.CovariateLabel attribute), [1] (pyhealth.calib.predictionset.FavMac attribute), [1] (pyhealth.calib.predictionset.LABEL attribute), [1] (pyhealth.calib.predictionset.NeighborhoodLabel attribute), [1] (pyhealth.calib.predictionset.SCRIB attribute), [1] (pyhealth.models.AdaCare attribute) (pyhealth.models.AdaCareLayer attribute) (pyhealth.models.Agent attribute) (pyhealth.models.AgentLayer attribute) (pyhealth.models.BaseModel attribute) (pyhealth.models.BIOT attribute) (pyhealth.models.califorest.BaseModel attribute) (pyhealth.models.califorest.CaliForest attribute) (pyhealth.models.CNN attribute) (pyhealth.models.CNNLayer attribute) (pyhealth.models.ConCare attribute) (pyhealth.models.ConCareLayer attribute) (pyhealth.models.ContraWR attribute) (pyhealth.models.CorGAN attribute) (pyhealth.models.Deepr attribute) (pyhealth.models.DeeprLayer attribute) (pyhealth.models.DenseBlock attribute) (pyhealth.models.DenseLayer attribute) (pyhealth.models.EHRMamba attribute) (pyhealth.models.EHRMambaCEHR attribute) (pyhealth.models.GAMENet attribute) (pyhealth.models.GAMENetLayer attribute) (pyhealth.models.GAN attribute) (pyhealth.models.GAT attribute) (pyhealth.models.GCN attribute) (pyhealth.models.GPT2 attribute) (pyhealth.models.GraphCare attribute) (pyhealth.models.GRASP attribute) (pyhealth.models.GRASPLayer attribute) (pyhealth.models.HALO attribute) (pyhealth.models.jamba_ehr.BaseModel attribute) (pyhealth.models.jamba_ehr.EmbeddingModel attribute) (pyhealth.models.jamba_ehr.JambaEHR attribute) (pyhealth.models.jamba_ehr.JambaLayer attribute) (pyhealth.models.jamba_ehr.MambaBlock attribute) (pyhealth.models.jamba_ehr.TransformerBlock attribute) (pyhealth.models.LogisticRegression attribute) (pyhealth.models.MambaBlock attribute) (pyhealth.models.MedFuse attribute) (pyhealth.models.MedFuseLayer attribute) (pyhealth.models.MedGAN attribute) (pyhealth.models.MedLink attribute) (pyhealth.models.MICRON attribute) (pyhealth.models.MICRONLayer attribute) (pyhealth.models.MLP attribute) (pyhealth.models.MoleRec attribute) (pyhealth.models.MoleRecLayer attribute) (pyhealth.models.MultimodalAdaCare attribute) (pyhealth.models.MultimodalRETAIN attribute) (pyhealth.models.MultimodalRNN attribute) (pyhealth.models.PromptEHR attribute) (pyhealth.models.ResBlock2D attribute) (pyhealth.models.RETAIN attribute) (pyhealth.models.RETAINLayer attribute) (pyhealth.models.RNN attribute) (pyhealth.models.RNNLayer attribute) (pyhealth.models.SafeDrug attribute) (pyhealth.models.SafeDrugLayer attribute) (pyhealth.models.SdohClassifier attribute) (pyhealth.models.SinusoidalTimeEmbedding attribute) (pyhealth.models.SparcNet attribute) (pyhealth.models.StageAttentionNet attribute) (pyhealth.models.StageNet attribute) (pyhealth.models.StageNetAttentionLayer attribute) (pyhealth.models.StageNetLayer attribute) (pyhealth.models.TCN attribute) (pyhealth.models.TCNLayer attribute) (pyhealth.models.TextEmbedding attribute) (pyhealth.models.TFM_TOKEN_Classifier attribute) (pyhealth.models.TFM_VQVAE2_deep attribute) (pyhealth.models.TFMTokenizer attribute) (pyhealth.models.Transformer attribute) (pyhealth.models.TransformerDeID attribute) (pyhealth.models.TransformerLayer attribute) (pyhealth.models.TransformersModel attribute) (pyhealth.models.TransitionLayer attribute) (pyhealth.models.UnifiedMultimodalEmbeddingModel attribute) (pyhealth.models.VAE attribute) (pyhealth.models.VisionEmbeddingModel attribute) transform() (pyhealth.models.califorest.IsotonicRegression method) Transformer (class in pyhealth.models) TransformerBlock (class in pyhealth.models.jamba_ehr) TransformerDeID (class in pyhealth.models) TransformerLayer (class in pyhealth.models) TransformersModel (class in pyhealth.models) TransitionLayer (class in pyhealth.models) translate() (pyhealth.processors.ModalityType method) TUABDataset (class in pyhealth.datasets) TUEVDataset (class in pyhealth.datasets) TupleTimeTextProcessor (class in pyhealth.processors) type() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) tzinfo (pyhealth.datasets.utils.datetime attribute) tzname() (pyhealth.datasets.utils.datetime method) U UnifiedMultimodalEmbeddingModel (class in pyhealth.models) unique_patient_ids (pyhealth.datasets.BaseDataset property) (pyhealth.datasets.BMDHSDataset property) (pyhealth.datasets.ChestXray14Dataset property) (pyhealth.datasets.ClinVarDataset property) (pyhealth.datasets.COSMICDataset property) (pyhealth.datasets.COVID19CXRDataset property) (pyhealth.datasets.DREAMTDataset property) (pyhealth.datasets.EHRShotDataset property) (pyhealth.datasets.eICUDataset property) (pyhealth.datasets.FHIRDataset property) (pyhealth.datasets.MedicalTranscriptionsDataset property) (pyhealth.datasets.MIMIC3Dataset property) (pyhealth.datasets.MIMIC4Dataset property) (pyhealth.datasets.MIMIC4FHIR property) (pyhealth.datasets.OMOPDataset property) (pyhealth.datasets.PhysioNetDeIDDataset property) (pyhealth.datasets.SleepEDFDataset property) (pyhealth.datasets.Support2Dataset property) (pyhealth.datasets.TCGAPRADDataset property) (pyhealth.datasets.TUABDataset property) (pyhealth.datasets.TUEVDataset property) UNK (pyhealth.processors.NestedSequenceProcessor attribute) (pyhealth.processors.SequenceProcessor attribute) (pyhealth.processors.StageNetProcessor attribute) unlink() (pyhealth.graph.knowledge_graph.Path method) upper() (pyhealth.processors.ModalityType method) use_mpf (pyhealth.tasks.MPFClinicalPredictionTask attribute) utcfromtimestamp() (pyhealth.datasets.utils.datetime method) utcnow() (pyhealth.datasets.utils.datetime method) utcoffset() (pyhealth.datasets.utils.datetime method) utctimetuple() (pyhealth.datasets.utils.datetime method) V VAE (class in pyhealth.models) VALID_FATHMM_PREDICTIONS (pyhealth.tasks.MutationPathogenicityPrediction attribute), [1] value_dim() (pyhealth.processors.StageNetProcessor method) (pyhealth.processors.StageNetTensorProcessor method) (pyhealth.processors.TemporalFeatureProcessor method) (pyhealth.processors.TemporalTimeseriesProcessor method) (pyhealth.processors.TimeImageProcessor method) (pyhealth.processors.TupleTimeTextProcessor method) VariantClassificationClinVar (class in pyhealth.tasks) vec_quantizer_loss() (pyhealth.models.TFM_VQVAE2_deep method) VisionEmbeddingModel (class in pyhealth.models) visit_to_index (pyhealth.datasets.CardiologyDataset attribute) (pyhealth.datasets.MIMICExtractDataset attribute) (pyhealth.datasets.OMOPDataset attribute) (pyhealth.datasets.SHHSDataset attribute) (pyhealth.datasets.SleepEDFDataset attribute) (pyhealth.datasets.TUABDataset attribute) (pyhealth.datasets.TUEVDataset attribute) visualize_image_attr() (in module pyhealth.interpret.utils) visualize_saliency_map() (pyhealth.interpret.methods.basic_gradient.BasicGradientSaliencyMaps method) VITAL_STATUS_ALIVE (pyhealth.tasks.CancerSurvivalPrediction attribute), [1] VITAL_STATUS_DEAD (pyhealth.tasks.CancerSurvivalPrediction attribute), [1] vocab_size() (pyhealth.processors.NestedSequenceProcessor method) (pyhealth.processors.SequenceProcessor method) (pyhealth.processors.StageNetProcessor method) Vocabulary (class in pyhealth.tokenizer) W walk() (pyhealth.graph.knowledge_graph.Path method) weekday() (pyhealth.datasets.utils.datetime method) with_name() (pyhealth.graph.knowledge_graph.Path method) with_segments() (pyhealth.graph.knowledge_graph.Path method) with_stem() (pyhealth.graph.knowledge_graph.Path method) with_suffix() (pyhealth.graph.knowledge_graph.Path method) write_bytes() (pyhealth.graph.knowledge_graph.Path method) write_text() (pyhealth.graph.knowledge_graph.Path method) X X_max_ (pyhealth.models.califorest.IsotonicRegression attribute) X_min_ (pyhealth.models.califorest.IsotonicRegression attribute) X_thresholds_ (pyhealth.models.califorest.IsotonicRegression attribute) xpu() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) Y y_thresholds_ (pyhealth.models.califorest.IsotonicRegression attribute) year (pyhealth.datasets.utils.datetime attribute) Z zero_grad() (pyhealth.calib.calibration.DirichletCalibration method), [1] (pyhealth.calib.calibration.HistogramBinning method), [1] (pyhealth.calib.calibration.KCal method), [1] (pyhealth.calib.calibration.TemperatureScaling method), [1] (pyhealth.calib.predictionset.ClusterLabel method), [1] (pyhealth.calib.predictionset.CovariateLabel method), [1] (pyhealth.calib.predictionset.FavMac method), [1] (pyhealth.calib.predictionset.LABEL method), [1] (pyhealth.calib.predictionset.NeighborhoodLabel method), [1] (pyhealth.calib.predictionset.SCRIB method), [1] (pyhealth.models.AdaCare method) (pyhealth.models.AdaCareLayer method) (pyhealth.models.Agent method) (pyhealth.models.AgentLayer method) (pyhealth.models.BaseModel method) (pyhealth.models.BIOT method) (pyhealth.models.califorest.BaseModel method) (pyhealth.models.califorest.CaliForest method) (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.ConCare method) (pyhealth.models.ConCareLayer method) (pyhealth.models.ContraWR method) (pyhealth.models.CorGAN method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.DenseBlock method) (pyhealth.models.DenseLayer method) (pyhealth.models.EHRMamba method) (pyhealth.models.EHRMambaCEHR method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.GAN method) (pyhealth.models.GAT method) (pyhealth.models.GCN method) (pyhealth.models.GPT2 method) (pyhealth.models.GraphCare method) (pyhealth.models.GRASP method) (pyhealth.models.GRASPLayer method) (pyhealth.models.HALO method) (pyhealth.models.jamba_ehr.BaseModel method) (pyhealth.models.jamba_ehr.EmbeddingModel method) (pyhealth.models.jamba_ehr.JambaEHR method) (pyhealth.models.jamba_ehr.JambaLayer method) (pyhealth.models.jamba_ehr.MambaBlock method) (pyhealth.models.jamba_ehr.TransformerBlock method) (pyhealth.models.LogisticRegression method) (pyhealth.models.MambaBlock method) (pyhealth.models.MedFuse method) (pyhealth.models.MedFuseLayer method) (pyhealth.models.MedGAN method) (pyhealth.models.MedLink method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.MoleRec method) (pyhealth.models.MoleRecLayer method) (pyhealth.models.MultimodalAdaCare method) (pyhealth.models.MultimodalRETAIN method) (pyhealth.models.MultimodalRNN method) (pyhealth.models.PromptEHR method) (pyhealth.models.ResBlock2D method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.SdohClassifier method) (pyhealth.models.SinusoidalTimeEmbedding method) (pyhealth.models.SparcNet method) (pyhealth.models.StageAttentionNet method) (pyhealth.models.StageNet method) (pyhealth.models.StageNetAttentionLayer method) (pyhealth.models.StageNetLayer method) (pyhealth.models.TCN method) (pyhealth.models.TCNLayer method) (pyhealth.models.TextEmbedding method) (pyhealth.models.TFM_TOKEN_Classifier method) (pyhealth.models.TFM_VQVAE2_deep method) (pyhealth.models.TFMTokenizer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerDeID method) (pyhealth.models.TransformerLayer method) (pyhealth.models.TransformersModel method) (pyhealth.models.TransitionLayer method) (pyhealth.models.UnifiedMultimodalEmbeddingModel method) (pyhealth.models.VAE method) (pyhealth.models.VisionEmbeddingModel method) zfill() (pyhealth.processors.ModalityType method)