Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | V A add_event() (pyhealth.data.Patient method) (pyhealth.data.Visit method) add_token() (pyhealth.tokenizer.Vocabulary method) add_visit() (pyhealth.data.Patient method) ATC (class in pyhealth.medcode) attr_dict (pyhealth.data.Event attribute) (pyhealth.data.Patient attribute) (pyhealth.data.Visit attribute) available_attributes (pyhealth.medcode.InnerMap property) available_keys (pyhealth.datasets.SampleDataset property) available_tables (pyhealth.data.Patient property) (pyhealth.data.Visit property) (pyhealth.datasets.BaseDataset property) B BaseDataset (class in pyhealth.datasets) batch_decode_2d() (pyhealth.tokenizer.Tokenizer method) batch_decode_3d() (pyhealth.tokenizer.Tokenizer method) batch_encode_2d() (pyhealth.tokenizer.Tokenizer method) batch_encode_3d() (pyhealth.tokenizer.Tokenizer method) binary_metrics_fn() (in module pyhealth.metrics.binary) C calculate_loss() (pyhealth.models.SafeDrugLayer method) categorize_los() (in module pyhealth.tasks.length_of_stay_prediction) CCSCM (class in pyhealth.medcode) CCSPROC (class in pyhealth.medcode) CNN (class in pyhealth.models) CNNLayer (class in pyhealth.models) collate_fn_dict() (in module pyhealth.datasets.utils) compute_alpha() (pyhealth.models.RETAINLayer method) compute_beta() (pyhealth.models.RETAINLayer method) compute_reconstruction_loss() (pyhealth.models.MICRONLayer static method) convert() (pyhealth.medcode.ATC static method) (pyhealth.medcode.InnerMap static method) convert_indices_to_tokens() (pyhealth.tokenizer.Tokenizer method) convert_tokens_to_indices() (pyhealth.tokenizer.Tokenizer method) CrossMap (class in pyhealth.medcode) D Deepr (class in pyhealth.models) DeeprLayer (class in pyhealth.models) drug_recommendation_eicu_fn() (in module pyhealth.tasks.drug_recommendation) drug_recommendation_mimic3_fn() (in module pyhealth.tasks.drug_recommendation) drug_recommendation_mimic4_fn() (in module pyhealth.tasks.drug_recommendation) drug_recommendation_omop_fn() (in module pyhealth.tasks.drug_recommendation) E eICUDataset (class in pyhealth.datasets) evaluate() (pyhealth.trainer.Trainer method) Event (class in pyhealth.data) event_list_dict (pyhealth.data.Visit attribute) F flatten_list() (in module pyhealth.datasets.utils) forward() (pyhealth.models.CNN method) (pyhealth.models.CNNLayer method) (pyhealth.models.Deepr method) (pyhealth.models.DeeprLayer method) (pyhealth.models.GAMENet method) (pyhealth.models.GAMENetLayer method) (pyhealth.models.MICRON method) (pyhealth.models.MICRONLayer method) (pyhealth.models.MLP method) (pyhealth.models.RETAIN method) (pyhealth.models.RETAINLayer method) (pyhealth.models.RNN method) (pyhealth.models.RNNLayer method) (pyhealth.models.SafeDrug method) (pyhealth.models.SafeDrugLayer method) (pyhealth.models.Transformer method) (pyhealth.models.TransformerLayer method) G GAMENet (class in pyhealth.models) GAMENetLayer (class in pyhealth.models) generate_ddi_adj() (pyhealth.models.GAMENet method) (pyhealth.models.SafeDrug method) generate_ehr_adj() (pyhealth.models.GAMENet method) generate_mask_H() (pyhealth.models.SafeDrug method) generate_molecule_info() (pyhealth.models.SafeDrug method) generate_smiles_list() (pyhealth.models.SafeDrug method) get_all_tokens() (pyhealth.datasets.SampleDataset method) get_ancestors() (pyhealth.medcode.InnerMap method) get_code_list() (pyhealth.data.Visit method) get_dataloader() (in module pyhealth.datasets.utils) get_ddi() (pyhealth.medcode.ATC method) get_descendants() (pyhealth.medcode.InnerMap method) get_distribution_tokens() (pyhealth.datasets.SampleDataset method) get_event_list() (pyhealth.data.Visit method) get_padding_index() (pyhealth.tokenizer.Tokenizer method) get_visit_by_id() (pyhealth.data.Patient method) get_visit_by_index() (pyhealth.data.Patient method) get_vocabulary_size() (pyhealth.tokenizer.Tokenizer method) H hash_str() (in module pyhealth.datasets.utils) I ICD10CM (class in pyhealth.medcode) ICD10PROC (class in pyhealth.medcode) ICD9CM (class in pyhealth.medcode) ICD9PROC (class in pyhealth.medcode) index_to_visit_id (pyhealth.data.Patient attribute) inference() (pyhealth.trainer.Trainer method) info() (pyhealth.datasets.BaseDataset static method) InnerMap (class in pyhealth.medcode) input_info (pyhealth.datasets.SampleDataset attribute) is_homo_list() (in module pyhealth.datasets.utils) L length_of_stay_prediction_eicu_fn() (in module pyhealth.tasks.length_of_stay_prediction) length_of_stay_prediction_mimic3_fn() (in module pyhealth.tasks.length_of_stay_prediction) length_of_stay_prediction_mimic4_fn() (in module pyhealth.tasks.length_of_stay_prediction) length_of_stay_prediction_omop_fn() (in module pyhealth.tasks.length_of_stay_prediction) list_nested_levels() (in module pyhealth.datasets.utils) load() (pyhealth.medcode.CrossMap class method) (pyhealth.medcode.InnerMap class method) load_ckpt() (pyhealth.trainer.Trainer method) lookup() (pyhealth.medcode.InnerMap method) M map() (pyhealth.medcode.CrossMap method) mean_pooling() (pyhealth.models.MLP static method) MICRON (class in pyhealth.models) MICRONLayer (class in pyhealth.models) MIMIC3Dataset (class in pyhealth.datasets) MIMIC4Dataset (class in pyhealth.datasets) MLP (class in pyhealth.models) module pyhealth.datasets.splitter pyhealth.datasets.utils pyhealth.tasks.drug_recommendation pyhealth.tasks.length_of_stay_prediction pyhealth.tasks.mortality_prediction pyhealth.tasks.readmission_prediction pyhealth.tokenizer mortality_prediction_eicu_fn() (in module pyhealth.tasks.mortality_prediction) mortality_prediction_mimic3_fn() (in module pyhealth.tasks.mortality_prediction) mortality_prediction_mimic4_fn() (in module pyhealth.tasks.mortality_prediction) mortality_prediction_omop_fn() (in module pyhealth.tasks.mortality_prediction) multiclass_metrics_fn() (in module pyhealth.metrics.multiclass) multilabel_metrics_fn() (in module pyhealth.metrics.multilabel) N NDC (class in pyhealth.medcode) num_events (pyhealth.data.Visit property) O OMOPDataset (class in pyhealth.datasets) P pad() (pyhealth.models.SafeDrugLayer method) parse_basic_info() (pyhealth.datasets.eICUDataset method) (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) (pyhealth.datasets.OMOPDataset method) parse_condition_occurrence() (pyhealth.datasets.OMOPDataset method) parse_diagnoses_icd() (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) parse_diagnosis() (pyhealth.datasets.eICUDataset method) parse_drug_exposure() (pyhealth.datasets.OMOPDataset method) parse_lab() (pyhealth.datasets.eICUDataset method) parse_labevents() (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) parse_measurement() (pyhealth.datasets.OMOPDataset method) parse_medication() (pyhealth.datasets.eICUDataset method) parse_physicalexam() (pyhealth.datasets.eICUDataset method) parse_prescriptions() (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) parse_procedure_occurrence() (pyhealth.datasets.OMOPDataset method) parse_procedures_icd() (pyhealth.datasets.MIMIC3Dataset method) (pyhealth.datasets.MIMIC4Dataset method) parse_tables() (pyhealth.datasets.BaseDataset method) parse_treatment() (pyhealth.datasets.eICUDataset method) Patient (class in pyhealth.data) patient_to_index (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.MIMIC4Dataset attribute) (pyhealth.datasets.OMOPDataset attribute) (pyhealth.datasets.SampleDataset attribute) pyhealth.datasets.splitter module pyhealth.datasets.utils module pyhealth.tasks.drug_recommendation module pyhealth.tasks.length_of_stay_prediction module pyhealth.tasks.mortality_prediction module pyhealth.tasks.readmission_prediction module pyhealth.tokenizer module R readmission_prediction_eicu_fn() (in module pyhealth.tasks.readmission_prediction) readmission_prediction_mimic3_fn() (in module pyhealth.tasks.readmission_prediction) readmission_prediction_mimic4_fn() (in module pyhealth.tasks.readmission_prediction) readmission_prediction_omop_fn() (in module pyhealth.tasks.readmission_prediction) RETAIN (class in pyhealth.models) RETAINLayer (class in pyhealth.models) reverse_x() (pyhealth.models.RETAINLayer static method) RNN (class in pyhealth.models) RNNLayer (class in pyhealth.models) RxNorm (class in pyhealth.medcode) S SafeDrug (class in pyhealth.models) SafeDrugLayer (class in pyhealth.models) SampleDataset (class in pyhealth.datasets) samples (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.MIMIC4Dataset attribute) (pyhealth.datasets.OMOPDataset attribute) save_ckpt() (pyhealth.trainer.Trainer method) set_event_list() (pyhealth.data.Visit method) set_task() (pyhealth.datasets.BaseDataset method) split_by_patient() (in module pyhealth.datasets.splitter) split_by_visit() (in module pyhealth.datasets.splitter) standardize() (pyhealth.medcode.ICD10CM static method) (pyhealth.medcode.ICD9CM static method) (pyhealth.medcode.ICD9PROC static method) (pyhealth.medcode.InnerMap static method) stat() (pyhealth.datasets.BaseDataset method) (pyhealth.datasets.SampleDataset method) (pyhealth.medcode.InnerMap method) strptime() (in module pyhealth.datasets.utils) sum_pooling() (pyhealth.models.MLP static method) T task (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.MIMIC4Dataset attribute) (pyhealth.datasets.OMOPDataset attribute) Tokenizer (class in pyhealth.tokenizer) train() (pyhealth.trainer.Trainer method) Trainer (class in pyhealth.trainer) training (pyhealth.models.CNN attribute) (pyhealth.models.CNNLayer attribute) (pyhealth.models.Deepr attribute) (pyhealth.models.DeeprLayer attribute) (pyhealth.models.GAMENet attribute) (pyhealth.models.GAMENetLayer attribute) (pyhealth.models.MICRON attribute) (pyhealth.models.MICRONLayer attribute) (pyhealth.models.MLP attribute) (pyhealth.models.RETAIN attribute) (pyhealth.models.RETAINLayer attribute) (pyhealth.models.RNN attribute) (pyhealth.models.RNNLayer attribute) (pyhealth.models.SafeDrug attribute) (pyhealth.models.SafeDrugLayer attribute) (pyhealth.models.Transformer attribute) (pyhealth.models.TransformerLayer attribute) Transformer (class in pyhealth.models) TransformerLayer (class in pyhealth.models) V Visit (class in pyhealth.data) visit_to_index (pyhealth.datasets.eICUDataset attribute) (pyhealth.datasets.MIMIC3Dataset attribute) (pyhealth.datasets.MIMIC4Dataset attribute) (pyhealth.datasets.OMOPDataset attribute) (pyhealth.datasets.SampleDataset attribute) visits (pyhealth.data.Patient attribute) Vocabulary (class in pyhealth.tokenizer)