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All Models

• pyhealth.data package
  • Submodules
  • pyhealth.data.base module
    • Standard_Template
      • Standard_Template.parse_admission()
      • Standard_Template.parse_icu()
      • Standard_Template.parse_patient()
  • pyhealth.data.base_cms module
    • CMS_Data
      • CMS_Data.generate_phenotyping()
      • CMS_Data.parse_admission()
      • CMS_Data.parse_event()
      • CMS_Data.parse_patient()
  • pyhealth.data.base_dataset module
    • BaseDataset
      • BaseDataset.modify_commandline_options()
  • pyhealth.data.base_mimic module
    • MIMIC_Data
      • MIMIC_Data.generate_episode()
      • MIMIC_Data.generate_episode_headers()
      • MIMIC_Data.parse_admission()
      • MIMIC_Data.parse_event()
      • MIMIC_Data.parse_icu()
      • MIMIC_Data.parse_patient()
      • MIMIC_Data.write_record()
    • parallel_parse_tables()
  • pyhealth.data.expdata_generator module
    • ecgdata
      • ecgdata.get_exp_data()
      • ecgdata.load_exp_data()
      • ecgdata.show_data()
    • imagedata
      • imagedata.get_exp_data()
      • imagedata.load_exp_data()
      • imagedata.show_data()
    • sequencedata
      • sequencedata.get_exp_data()
      • sequencedata.load_exp_data()
      • sequencedata.show_data()
    • textdata
      • textdata.get_exp_data()
      • textdata.load_exp_data()
      • textdata.show_data()
  • pyhealth.data.mimic_clean_methods module
    • clean_crr()
    • clean_dbp()
    • clean_fio2()
    • clean_height()
    • clean_lab()
    • clean_o2sat()
    • clean_sbp()
    • clean_temperature()
    • clean_weight()
  • pyhealth.data.rnn_reader module
    • DatasetReader
    • time_series_get()
  • Module contents
• pyhealth.evaluation package
  • Submodules
  • pyhealth.evaluation.binaryclass module
    • evaluator()
    • get_avg_results()
    • get_predict_results()
  • pyhealth.evaluation.evaluator module
    • check_evalu_type()
    • func()
  • pyhealth.evaluation.mortality module
  • pyhealth.evaluation.multilabel module
    • evaluator()
    • get_avg_results()
    • get_top_k_results()
  • pyhealth.evaluation.phenotyping module
  • Module contents
• pyhealth.models.sequence package
  • Submodules
  • pyhealth.models.sequence.dipole module
    • ConcatenationAttention
      • ConcatenationAttention.forward()
      • ConcatenationAttention.training
    • Dipole
      • Dipole.fit()
      • Dipole.load_model()
    • GeneralAttention
      • GeneralAttention.forward()
      • GeneralAttention.training
    • LocationAttention
      • LocationAttention.forward()
      • LocationAttention.training
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
  • pyhealth.models.sequence.embedgru module
    • EmbedGRU
      • EmbedGRU.fit()
      • EmbedGRU.load_model()
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
  • pyhealth.models.sequence.gru module
    • GRU
      • GRU.fit()
      • GRU.load_model()
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
  • pyhealth.models.sequence.lstm module
    • LSTM
      • LSTM.fit()
      • LSTM.load_model()
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
  • pyhealth.models.sequence.raim module
    • RAIM
      • RAIM.fit()
      • RAIM.load_model()
    • RaimExtract
      • RaimExtract.forward()
      • RaimExtract.training
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
  • pyhealth.models.sequence.retain module
    • Retain
      • Retain.fit()
      • Retain.load_model()
    • RetainAttention
      • RetainAttention.forward()
      • RetainAttention.training
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
  • pyhealth.models.sequence.rf module
    • RandomForest
      • RandomForest.fit()
      • RandomForest.get_results()
      • RandomForest.inference()
      • RandomForest.load_model()
  • pyhealth.models.sequence.stagenet module
    • StageNet
      • StageNet.fit()
      • StageNet.load_model()
    • callPredictor
      • callPredictor.cumax()
      • callPredictor.forward()
      • callPredictor.step()
      • callPredictor.training
  • pyhealth.models.sequence.tlstm module
    • callPredictor
      • callPredictor.forward()
      • callPredictor.training
    • tLSTM
      • tLSTM.fit()
      • tLSTM.load_model()
    • tLSTMCell
      • tLSTMCell.forward()
      • tLSTMCell.reset_parameters()
      • tLSTMCell.training
  • pyhealth.models.sequence.xgboost module
  • Module contents
• pyhealth.models.image package
  • Submodules
  • pyhealth.models.image.typicalcnn module
    • TypicalCNN
      • TypicalCNN.fit()
      • TypicalCNN.load_model()
  • Module contents
• pyhealth.utils package
  • Submodules
  • pyhealth.utils.check module
    • check_expdata_dir()
    • check_model_dir()
    • label_check()
  • pyhealth.utils.utility module
    • check_parameter()
    • make_dirs_if_not_exists()
    • read_csv_to_df()
    • read_excel_to_df()
  • pyhealth.utils.utility_parallel module
    • partition_estimators()
    • tqdm_joblib()
    • unfold_parallel()
  • Module contents